Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3505g00004 ATGGACGCCGGCGAAGCGCACTTCGGTTTGGAGCTCCGGAGGAGGAGTTCCGGCGACGCGGACTTGGAGCCGAACGATCCGAATCGACCAGGGTGGCGTCCTAATTCTAGCGCCGACGAAGCTGCGGTCTCCGGCGCCACCGGCGGCGCTAGGTATAAGCTGATGTCGCCGGCGAAGCTCCCGATCACGAGGTCGCCGTGCGTCATGATTCCTCCGGGGTTGAGTCCGACGTCGTTTTTGGAATCTCCGGTGCTGCTCTCTAACATGAAGGTGGAACCTTCCCCAACTACAGGGTCCCTTCCTAGGCTTCATCTAACCGCACATGGTTCTGTGACTTCTGCTGCATCCGCTACATTTCCTGCAACAAACGTATGCTTCAATACCAACAATGTTGATGACAGAAAATCTAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGTTCCTGTGGACTTCAACAACCATGCAAGTGAAAAATCTACTCAAATAGATGGTCAAGAAAAAGCTCAATCTTTTGCCTCACCACCATTAGTCAAAAGTGAGATAGCAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGGTAAAATGGTTAGCTCAGGGGTTAATGCTCATGTTGAAGCCGATTTGGATGAATCTAACCACAGGGGAAACATTGCAACTGGGCTTCAAGCATCACAAGTTGAGGGTAGGGGCAGTGGACTTTCAGTTGCAGCTGAGAGAGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACACCCTAACTGTGAAGTGAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAACTATTGTGTCTATGCAAGAAGAGAGATCGGACAAGGCTTCTTTGACTAGCCGAGATGATAAAGGATCCAATATATATGGCCAGATGTCTCACACAACTGAGCCCAACAGTACCCCAGAGTTATCACCTGTAGCAACAAATGATGATAGTCTAGAGGGTACGGGATTATTGTCAAACCAGAATAATGATGAGGTTGATGATGATGATCTCTTCTCAAAGCGAAGAAAAATGGATCTTGGAAATGCTGACATCACTCCTGTAATTAAGCCTATCCGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGTAAATATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTCGGAGTTATTACAAATGCACGAATGCCGGTTGCCCTGTAAGAAAACATGTGGAGAGAGCATCCAATGATCCTAAAGCTGTAATAACAACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGATCATCAGCTGCAGGTGCACAAACAAGAATTAGGCCAGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGTATTAGCCCTTCTGCTGAAAATAGTTCAAACAAGCAAGGGAGAATGATGCTTTCAGAATTTGGGGACGGTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAACTCAAATCAATATGGTTCTAGAGATAATCAGAGTGATGGTACATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACATGGGAAGAATAATAATGGGTCCTTGA 1800 0.4528 MDAGEAHFGLELRRRSSGDADLEPNDPNRPGWRPNSSADEAAVSGATGGARYKLMSPAKLPITRSPCVMIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLHLTAHGSVTSAASATFPATNVCFNTNNVDDRKSSFFEFKPHSRSNMVPVDFNNHASEKSTQIDGQEKAQSFASPPLVKSEIAVPSNELSLSSPGKMVSSGVNAHVEADLDESNHRGNIATGLQASQVEGRGSGLSVAAERASDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIVSMQEERSDKASLTSRDDKGSNIYGQMSHTTEPNSTPELSPVATNDDSLEGTGLLSNQNNDEVDDDDLFSKRRKMDLGNADITPVIKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASNDPKAVITTYEGKHNHDVPTARNSCHDMAGSSAAGAQTRIRPEESDTISLDLGMGISPSAENSSNKQGRMMLSEFGDGQTHTSNSNFKFVHTSAPVYFGVLNNNSNQYGSRDNQSDGTSLNHSAYPCPQNMGRIIMGP 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3505g00004 599 SUPERFAMILY WRKY DNA-binding domain 412 480 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3505g00004 599 ProSiteProfiles WRKY domain profile. 240 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 ProSiteProfiles WRKY domain profile. 415 480 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 SMART WRKY_cls 420 479 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 SMART WRKY_cls 245 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 MobiDBLite consensus disorder prediction 318 380 - -
Gabi3505g00004 599 MobiDBLite consensus disorder prediction 1 44 - -
Gabi3505g00004 599 FunFam WRKY transcription factor 235 305 - -
Gabi3505g00004 599 Gene3D WRKY domain 405 481 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 Gene3D WRKY domain 237 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 FunFam WRKY transcription factor 33 407 473 - -
Gabi3505g00004 599 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 81 518 IPR044810 GO:0003700
Gabi3505g00004 599 SUPERFAMILY WRKY DNA-binding domain 243 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 Pfam WRKY DNA -binding domain 421 477 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 Pfam WRKY DNA -binding domain 246 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00004 599 MobiDBLite consensus disorder prediction 332 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3505g00004 Gabi-Chr3505 86696 92845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3505g00004 55 599 WRKY Transcription Factor Family AT4G26640 55.835 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3505g00004 WRKY 8.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3505g00004 - - gmx:100781491 974.926