Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3505g00002 ATGCAAACATCTCAGAAACATGAATTTTCTTATGGCTCTGGCAGGTTCTACGATGAGCCTGTGCAAAATCCGGAGTCATATTGCTTACCATCAAGTGAGAACCTAGACAATTACTCTTCCTCTGATAACAGCAGCCAAGCAACCTACCCTCCACTCCAAACATTAGAACACCATTACACCCTTGAACCTGCTTCAGCAAGCTACGGTTTCCCTTACCAAAATTCTCCCCCTGCTGTCGGTTTCTCACCTAACTATAGCCCAGTGTCAAAGCTAGGTTCAGCATCATATGTGTTAAGGCCACAGCATTCTCTTGAAACTATTAATGGCTCACCTGAGAATGATTCTTACTCAACACATGAACTTGATGAATGGAATAAGATAAGAGAGATTGAAGCTTCTCTGCTGGGACCTAATGAAGACATGCTAGATATATATGATGCTGTACTTCCAGAAATATCTGATTCATTTTTGTCAGAGGAAGAGAAGTTGAAGAAAATGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTCTGCAAAAGCAATGGCTGTGAATGATATGGAGACAACTGAATGGCTGATGTCAGAGTTGAGTAAAATGGTGTCCATTTCGGGCAACCCAATGCAACGATTAGGAGCATACATGTTGGAGGCTCTTGTTGCAAGGATGAGGTCTTCAGGAAGCACAATATACAAATCCTTAAAATGCAGTGAACCTACTGGTAATGAACTACTTTCATACATGCATGTACTTTATGAAATATGTCCATACTTCAAGTTTGGCTATATGTCAGCAAATGGAGCAATTGCTGAAGCTATGAAGGATGAAAGTGAAGTTCACATAATTGATTTTCAGATTGGTCAGGGAAGCCAATGGGTGAGTCTAATCCAGGCGCTTGCTCGCCGGCCTGGAGGACCGCCAAAGATCAGAATAACTGGTGTTGATGATTCCGTTTCTGCTTATGCCCGGGGAGGGGGGCTCGATATTGTGGGAAAAAGGTTGTCAACACTTGCACACTCATGTCATGTACCTTTTGAGTTTCATGCTATCAAAGTTTCTGCTTCTGAGGTGCAACTTGAAGACCTTGAACTTAGACCTTATGAAGCTGTGGCTGTGAATTTTGCCATTATGCTGCACCATGTGCCAGATGAAAGTGTGAACAGTCAGAACCATCGCGACCGGTTGTTGAGGTTGGCAAAGCACTTGTCTCCTAAGGTAGTGACTCTGGTTGAGCAAGAGTTCAACACCAATAATGCTCCATTCTTGCAGCGTTTTGTTGAGACAATGAACTATTACTTGGCTGTTTTTGAATCAATTGATGTTGTTCTGGCAAGGGAGAGCAAAGAGAGGATTAATGTGGAACAACATTGTTTGGCTAGAGAAGTTGTAAACCTAGTAGCATGTGAAGGGGAAGAAAGAGTGGAACGTCATGAGCTTTTGAATAAGTGGAGAATGCGTTTTATGATGGCTGGATTTACACCTTATCCATTGAGCTCCTTTATTAATTCTTCAATCAAGGATCTTCTGGAGAGCTACCGTGGACATTACACTCTAGAAGAGAGAGATGGTGCACTATATCTTGGTTGGATGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1632 0.421 MQTSQKHEFSYGSGRFYDEPVQNPESYCLPSSENLDNYSSSDNSSQATYPPLQTLEHHYTLEPASASYGFPYQNSPPAVGFSPNYSPVSKLGSASYVLRPQHSLETINGSPENDSYSTHELDEWNKIREIEASLLGPNEDMLDIYDAVLPEISDSFLSEEEKLKKMMISRGDLKEMLYTSAKAMAVNDMETTEWLMSELSKMVSISGNPMQRLGAYMLEALVARMRSSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKDESEVHIIDFQIGQGSQWVSLIQALARRPGGPPKIRITGVDDSVSAYARGGGLDIVGKRLSTLAHSCHVPFEFHAIKVSASEVQLEDLELRPYEAVAVNFAIMLHHVPDESVNSQNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFESIDVVLARESKERINVEQHCLAREVVNLVACEGEERVERHELLNKWRMRFMMAGFTPYPLSSFINSSIKDLLESYRGHYTLEERDGALYLGWMNQVLIASCAWR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3505g00002 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
Gabi3505g00002 543 MobiDBLite consensus disorder prediction 25 49 - -
Gabi3505g00002 543 Pfam GRAS domain family 174 543 IPR005202 -
Gabi3505g00002 543 MobiDBLite consensus disorder prediction 1 49 - -
Gabi3505g00002 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 537 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3505g00002 Gabi-Chr3505 80052 83490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3505g00002 1 543 GRAS Transcription Factor Family AT1G50600 56.000 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi3505g00002 GRAS 4.7e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3505g00002 - - gmx:100785400 876.7