Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3498g00002 ATGGAAGAACCGGTTGTTGTGAACAAAGGAGAAGAACCTCTGAATTTGCCTCCAGGTTTCAGGTTTCACCCTACGGATGAAGAGATCATAACTTGTTATCTGATAGAAAAAGTGATGAATAGCAGTTTCAGTGCAATTGCTATTGGTGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTACCAAAGAAAGCCAAGATGGGGGAGAAAGATTGGTACTTCTTTTGTCTTAGAGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACAGAATCAGGGTACTGGAAGGCCACTGGAAAAGATAAGGAGATTTTTAAAGGGAAAGGTAACTTGGTGGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGGGAAAAATCTAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCAAGTCACAACCTCCCTAAGACTGCAAAGGATGAATGGGTTGTCTCCAAGATATTTCACAAGAACACAGATGTTAAAAAAACCCCAATTCCTGGGCTTTGGAGGATGAACTCATTTGGGGATGATCTTGTGGATTTTTCTTCACTCCCACCTCTTGTGGATCCTCCTTACAACCACACCACCAATAAGCCTTCAAGTTACATTGACAATGACTTCAAATGCACTAGCCAACCATCATCATCAACTAAATCAACACCATCTTACAACTACTACAACATTCCCAGCTTTTTCACCACCACCAACAACAACATAAACCAGATGCTGATCAAGCCAGAAGATCACAGAAACTATGAGACCAACCAAGGGAATTTCAGTGATCCAATGGGAAGCACCCTTTCTCAGCATAACATGCTCTCAGATTATTATATACACCAAGGCAAGAACATTTCCATGCCTAGTGTTGCAGCTGGTTCAGGTTTTTGGAGCAACAATGATCATGTTATTTCTGGAGCATTGAACAAACAGTGCAAGATGGAGCAATTCTCTACCAACCAATCTGTGGTGAGTGTCTCGCAGGACACATGCATGAGCAATGACAGAAACACTGACACATCCTCAGTGGTTTCGAAGCTAGACATGGGAAGGAATAGAACATTGTATGAAGATCTTGAGGGTCCTTCTTCAGTTGCTCCCCTCTCTGATTTGGAATGCCTTTGGGATGACTATTGA 1167 0.4233 MEEPVVVNKGEEPLNLPPGFRFHPTDEEIITCYLIEKVMNSSFSAIAIGEADLNKCEPWDLPKKAKMGEKDWYFFCLRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKSNWVMHEFRLEGKFASHNLPKTAKDEWVVSKIFHKNTDVKKTPIPGLWRMNSFGDDLVDFSSLPPLVDPPYNHTTNKPSSYIDNDFKCTSQPSSSTKSTPSYNYYNIPSFFTTTNNNINQMLIKPEDHRNYETNQGNFSDPMGSTLSQHNMLSDYYIHQGKNISMPSVAAGSGFWSNNDHVISGALNKQCKMEQFSTNQSVVSVSQDTCMSNDRNTDTSSVVSKLDMGRNRTLYEDLEGPSSVAPLSDLECLWDDY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3498g00002 388 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Gabi3498g00002 388 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Gabi3498g00002 388 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Gabi3498g00002 388 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Gabi3498g00002 388 FunFam NAC domain-containing protein 100-like 25 171 - -
Gabi3498g00002 388 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3498g00002 Gabi-Chr3498 37641 39634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3498g00002 1 386 NAC Transcription Factor Family AT5G18270 50.125 5.74e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3498g00002 NAM 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3498g00002 - - aprc:113861501 557.755