Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3495g00006 ATGGTATCCGAAAATCAAAAATTAGCAACTTGTTCTGTTTCGGGAGATAGCAATGGTGACTCTATTGAGACTGATGTACCTTTCCTATTGATTACTCTGAGCTTATGGAAAGAGAAGAAAGACAATAACACGTACCAAGGAACCACATGGCAAATTAATTTCAATCTTGATTATGTAAATACCAATGGAAACTACAAATTGCGAGTGGCTTTGGCATCTGTACATTCTGTTGAGCTACAGGTACCCCAACCAGAGTCATCGCGCCAAAGGAGCTCAACATCAACTAACCGCAAAGTAGAAATCTTCATCCCACGAAACACTTTACCTAATCCAAAATCTTCACTCTTCAATCATGTGTGA 360 0.3917 MVSENQKLATCSVSGDSNGDSIETDVPFLLITLSLWKEKKDNNTYQGTTWQINFNLDYVNTNGNYKLRVALASVHSVELQVPQPESSRQRSSTSTNRKVEIFIPRNTLPNPKSSLFNHV 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3495g00006 119 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3495g00006 119 Pfam Polysaccharide lyase family 4, domain III 36 85 IPR029411 -
Gabi3495g00006 119 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 38 95 - -
Gabi3495g00006 119 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3495g00006 Gabi-Chr3495 66726 73705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3495g00006 39 81 Polysaccharide Lyase AT1G09890 60.465 1.49e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3495g00006 K18195 - gmx:100786488 70.0922