Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3495g00001 ATGGGAAGATCTCCATGCTGTGATGAAATTGGCTTGAAGAAAGGGCCTTGGACCCCTGAAGAAGATCAGAAGCTTGTTAACTACATTGAAAAACATGGTCATGCTAGCTGGAGGGCTCTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGATGGACGAACTACCTGAGGCCTGACATCAAAAGAGGGAAGTTTTCCCAAGAAGAAGAACAAACAATTCTGAATCTCCATGGCATACTTGGAAACAAATGGTCAACAATTGCAAGCCACTTACCGGGTAGGACAGATAATGAAATCAAGAATTTTTGGAATACCCATCTAAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAACCTCGAACTGATATGTTCTCAGGCTTGTCTCATCTCATAGCACTGGCTAATCTGAAAGAAATCTTGGACCATCATCAACCATGGGAACAAAATGCTGCAAGACTACAAGCAGAGGCCATCCAGTTAGCAAGGCTTCAATACTTACAACAACACCACCTCATGCAGCCACAAGTTTCAACCGAGGCTGAGCCTAACACAAATAGTATGAACAGTACCTTCACAAACATGGACACCATTAATCTTTCTAATGATAAGTTTCAAAACACCATCTCATCTATTGGAATCAACGGTCTGCAATTCCTCAATGATTCCATCCCTTTCTCTCACATGCCTGACTTAAAAACAACACCATTAAATGACATGGTCCAAACCCCTCATGAATCCATAGCTTTCTATCAAGGAGAAAGTTCTCCTAATTCTCCATGGCTTCTTTCATGCTCAAGCACTAATACTTCATCTCCTTCCGATGTGGTTCCACCTGTGACGGATATTTCATTGAATAATATGGTCGATAATAATTGCCCTGCTTCTACTATTTGGCCTGAACTCATGCTAGAGGACCCTTTGTTCAATGTGATTCCCTAG 966 0.4182 MGRSPCCDEIGLKKGPWTPEEDQKLVNYIEKHGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHGILGNKWSTIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDMFSGLSHLIALANLKEILDHHQPWEQNAARLQAEAIQLARLQYLQQHHLMQPQVSTEAEPNTNSMNSTFTNMDTINLSNDKFQNTISSIGINGLQFLNDSIPFSHMPDLKTTPLNDMVQTPHESIAFYQGESSPNSPWLLSCSSTNTSSPSDVVPPVTDISLNNMVDNNCPASTIWPELMLEDPLFNVIP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3495g00001 321 CDD SANT 69 112 IPR001005 -
Gabi3495g00001 321 Gene3D - 69 116 - -
Gabi3495g00001 321 SMART sant 66 114 IPR001005 -
Gabi3495g00001 321 SMART sant 13 63 IPR001005 -
Gabi3495g00001 321 CDD SANT 16 61 IPR001005 -
Gabi3495g00001 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3495g00001 321 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3495g00001 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3495g00001 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3495g00001 321 FunFam MYB-related transcription factor 13 66 - -
Gabi3495g00001 321 Gene3D - 11 67 - -
Gabi3495g00001 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3495g00001 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3495g00001 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Gabi3495g00001 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3495g00001 321 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3495g00001 Gabi-Chr3495 8994 10175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3495g00001 1 321 MYB Transcription Factor Family AT5G10280 50.144 2.16e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3495g00001 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3495g00001 K09422 - gmx:100785374 438.728