Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3494g00007 ATGCATATAGGTCAAACGGATACAACTTCAGTGAAATGTCTAATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAGTAAAACCTATGCCTTTTCAGAAAATCTGTAATAATATGGTTGGTGTGTTAAAGTGTTTGAAGCCTGTGCTTGATGACATTATGGATTACAAAATCCCTTTAGATGAAAATCTATGTAAAGAGTGTGAAGAATTGGATATGCGGGTTAATGAAGCTAGAGATTTCATTGAAAAATGGGGTCCAAAGATGAGCAAAATTCACAGTGTTCTACAAAGTGGGACATTGTTGATCAAGTTACAGGGCACTTCACTTGATATTTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTTCAGCGCTATATCCAGGAACTTCAATGTCTCAAGAAGGAAACGACAATGGTCAATATAGAAGAAGCACTGAGAAACCAAAGGGATAATATTGAACCTTGCAATGAACATCTAAAGGAAATTATTGAGTTACTTAAATTGACATCAAACCAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGCCAATAAAATGAAAGGGGACTTGGAAGAAATTAACGAAATTGTGAATCTTGTCTGCAACTTACGTGATTATGTGATGAAAACTGAGAGCCCTATAGTCAAGAGTGGTGTCCCAATCCCTCCATACTTCCGCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTAATCGTGGCTTCAGGTCAAACATATGACAGACAATCCGTCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAGACTCATCAGAGACTTACGCATACAAATCTCACTCCCAATTACACTGTGAAAGCTATGATAGCAAATTGGTGTGAGGAAAATGATGTCAAACTTTCCAGTAACTCTGAGCACAATAATTCTTCCCGTATCACATCCCCCTCAGATCGTTTATTGCCTCAAGACTTAGCTCATGCATGTGGTTTTGGGTCTTTACCTAGTCACAATTCCATTTCAACATCATCTCTTCAAACTGGAGATACTTTTGAGAAGAAAAAGGGTGATAACTCTTTCAGATTAAGTGGAGAATCCAATGGATGCCAGAGTGGAGCAACAGAAAAGTGTGAGCAACAATCCCCATATAGTCACAGCAGAAGTGAATCATTTTCAAGTTCATTTTCTAGTACTGATTGTGTGCCTGCAGTTTCAAAAGAGGCGTCAGGGATATCTAGTAAGCATCAAAATGTGAAGGTGTTGTCCGGAGAAATCACAAATGTGTGTCCTGCTTCTCCTGGTAATAAACAACCAGGGTTATCTGGAAAGCAATTTCAAAGCCCTGGATCAAAAGTGGGAGGGATGGAGAATGGAAAAAATAATAATAATAATAGTCAATCAAGAACTGATTCTCATCCTGTTTTTAACATGGGATTGGATGGCTTGACCACCTCATCTCATGTCAATAAATTGATTGAAGACCTTCACAGTCCATCAATTGAAGTGCAAACTACTGCTGCAGAAGAATTGAGGCTCCTTACAAAGTGTAACACAGAAAACCGTATCATTGTAGGGCAGTGTGGGGCGGTCGTGCCTTTAATTTCACTGCTATATTCAGATGTAAAGATAACAGAAGAGCATGCTGTGACAGCTCTGCTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTGAAGGCAGGAAATGATGGTGCCAAGGAGAATTCTGCAGCAGCTCTATTCAGCCTCTCTGTAATAGAGAACAACAAGGCAAAGATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTTGCGACAGGAACTCTTAGAGGGAAGAAGGACGCTGCTACTGCTTTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAATTCAAGCTGGAGCGGTGAAATTTCTGGTTCGGCTAATGGACCCTGCTGATGGAATTGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTACAGAGGGCCGATTAGAAATTGCAAGGGAAGGGGGCATCCCCTTACTGGTTGAAATTGTTGAATCAGGTTCCCAGCGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAACTATGCCTTCATAGTTCCAGGTTTTGTACTCTGGTTTTGCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGGGAAGGGAAAATCATGA 2364 0.4091 MHIGQTDTTSVKCLINSISRFIHLVSCQTVKPMPFQKICNNMVGVLKCLKPVLDDIMDYKIPLDENLCKECEELDMRVNEARDFIEKWGPKMSKIHSVLQSGTLLIKLQGTSLDICHMIVRSLQSPPSASVLANLQRYIQELQCLKKETTMVNIEEALRNQRDNIEPCNEHLKEIIELLKLTSNQELLKESIAVEKERLNAEANKMKGDLEEINEIVNLVCNLRDYVMKTESPIVKSGVPIPPYFRCPLSLELMLDPVIVASGQTYDRQSVQKWLDHGLTVCPKTHQRLTHTNLTPNYTVKAMIANWCEENDVKLSSNSEHNNSSRITSPSDRLLPQDLAHACGFGSLPSHNSISTSSLQTGDTFEKKKGDNSFRLSGESNGCQSGATEKCEQQSPYSHSRSESFSSSFSSTDCVPAVSKEASGISSKHQNVKVLSGEITNVCPASPGNKQPGLSGKQFQSPGSKVGGMENGKNNNNNSQSRTDSHPVFNMGLDGLTTSSHVNKLIEDLHSPSIEVQTTAAEELRLLTKCNTENRIIVGQCGAVVPLISLLYSDVKITEEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKAGNDGAKENSAAALFSLSVIENNKAKIGRSGAVKALVDLLATGTLRGKKDAATALFNLSIFHENKARIIQAGAVKFLVRLMDPADGIVDKAVALLSNLSTITEGRLEIAREGGIPLLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3494g00007 787 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Gabi3494g00007 787 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Gabi3494g00007 787 MobiDBLite consensus disorder prediction 354 409 - -
Gabi3494g00007 787 Coils Coil 128 148 - -
Gabi3494g00007 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Gabi3494g00007 787 PANTHER U BOX DOMAIN-CONTAINING 34 775 - -
Gabi3494g00007 787 FunFam RING-type E3 ubiquitin transferase 487 780 - -
Gabi3494g00007 787 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 665 706 IPR000225 GO:0005515
Gabi3494g00007 787 Pfam Armadillo/beta-catenin-like repeat 616 652 IPR000225 GO:0005515
Gabi3494g00007 787 Pfam Armadillo/beta-catenin-like repeat 531 570 IPR000225 GO:0005515
Gabi3494g00007 787 Pfam Armadillo/beta-catenin-like repeat 572 611 IPR000225 GO:0005515
Gabi3494g00007 787 SMART arm_5 531 571 IPR000225 GO:0005515
Gabi3494g00007 787 SMART arm_5 694 734 IPR000225 GO:0005515
Gabi3494g00007 787 SMART arm_5 654 693 IPR000225 GO:0005515
Gabi3494g00007 787 SMART arm_5 572 612 IPR000225 GO:0005515
Gabi3494g00007 787 SMART arm_5 613 653 IPR000225 GO:0005515
Gabi3494g00007 787 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Gabi3494g00007 787 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 624 666 IPR000225 GO:0005515
Gabi3494g00007 787 SUPERFAMILY RING/U-box 239 314 - -
Gabi3494g00007 787 Coils Coil 184 216 - -
Gabi3494g00007 787 CDD RING-Ubox_PUB 242 294 IPR045210 -
Gabi3494g00007 787 Gene3D - 576 784 IPR011989 -
Gabi3494g00007 787 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Gabi3494g00007 787 MobiDBLite consensus disorder prediction 444 486 - -
Gabi3494g00007 787 SUPERFAMILY ARM repeat 498 774 IPR016024 -
Gabi3494g00007 787 Gene3D - 457 575 IPR011989 -
Gabi3494g00007 787 MobiDBLite consensus disorder prediction 375 409 - -
Gabi3494g00007 787 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3494g00007 Gabi-Chr3494 81302 86220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3494g00007 7 787 U-box Gene Family AT3G54790 54.177 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3494g00007 - - gmx:100800949 1249.57