Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3494g00003 ATGCCGTCGCTACTATCTCCGGGTAAAATCCATCGGTTGGAGATGGAGAATTTCAAGTCGTACAAGGGGTTCCAAGTGATTGGTCCCTTCTACGACTTCACGGCGATCATTGGCCCCAACGGTGCCGGCAAGTCGAACCTCATGGACGCCATAAGCTTCGTGCTCGGCGTCAGGACCGGCCAGCTTCGCGGCGCGCAACTGAAGGACTTGATCTACGCCTTTGATGACAGGGAGAAGGAGCAGAAGGGGCGCAGGGCCTTCGTTCGTTTGGTTTACCAACTCGCCAGCGGTTCCGAGATCCAATTCACCAGGACCATCACCAGCGCCGGCGCCAGCGAGTACCGTATCGACGGTAACCTTGTCACCTGGGATGTCTACAATGCCAAGCTTAAGTCCCTTGGGATTCTTGTCAAGGCTCGCAATTTCTTAGTGTTTCAGGGTGATGTGGAATCCATTGCGTCCAAAAATCCAAAAGAGCTCACTGCGCTTCTTGAGCAGATATCTGGCTCCGATGAGCTCAAGAGGGACTATGAGCAATTTGAAGAAGAAAAAGCTGAGGCTGAAGAAAAATCAGCGTTTGTTTATCAGAAGAAGAAGGCAGTAGTTATGGAGAGAAAGCAGAAGAAAGAACAAAAGGAAGAAGCAGAGAAACATCTCCGCCTGCAGGATCAGCTGAAATCTTTGAAGAAAGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAATGATTTTGTTAAAACAACTGAGGACCTTGAAGATGAGAAAAAAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAATTTTGAACATGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAGATATCTGAAAGAGATTACACAACGTGAAAAGAGAATTGCTGAGAAAAGCAACAAACTTGATAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCAATTCGAAAATTAAAAAAGGGAAGAAGGAGCTTGATAAAAAAAGAGAAGAGCGGAGGAGACATGCTGCTGATATAGCGGAGCTACAGAGGGGCATTCAGGACCTCACAGCAAAAGTGGTAGACATACAGGAAAAGGGTCGAGTTGTTGGCAATCAACTTAAGTTAGATGGCAATGACTTGGAAGAATATTTTCGAATTAAGGAGGAAGCTGGGACGAAAACTGCAAAGCTTAGAGGGGAAAAAGAGCTTCTGGATAGGCAGCAGCATGCTGATAGTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGAGAGTCTGAACTGAATTCACAGGAAGAACAGATGCGGGCAAGGCTGAAAAAAATTATTGATAATTCTGCGAAAAATAAGGATGGCCTTGCAAACTTGAAAAAAGAACTGCGTGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGCGAAATAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGACAACGAGAGAGATGCTAGGCTGTCTCAGGCTGTGGAGACTCTGAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACCCAGAAAAAGTTTAACCTAGCTGTCACTGTTGCCATGGGTAGATTTATGGATGCAGTCGTAGTTGAAGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCCCAGACGTTTATTCCTCTGCAGTCAGTTCGCGTGAAGCCAATAATAGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGATTTTTGATGTGATTCAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTGGGGAATACTCTTGTCTGTGATGATCTTGAGGAGGCAAAAGTTTTGAGCTGGAGTGGTGAGAGGTTTAAAGTTGTTACTGTGGATGGAATTCTGCTGACAAAATCCGGTACAATGACTGGTGGCACTAGTGGGGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCGGAGTTGGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAGAAGCGAAGCATTGAAGACAAACTTTCAAATTTGAACCAAGAAAAAGAGACCATCAGAGAAGAAATTGAACGTATCAGTCCAGAACTCCAAAAGTTAAATGATGCTGTTGACAAGAGGAATGGAGAAATACTTAGGCTGGAGAATAGGATAAATGTAATCACTGATCGGATATACAAAGACTTTAGTCAGTCAGTCGGAGTTTCAAACATACGTGAGTATGAAGAAAACCAACTAAAGGTTGCTCAAAATGTGGCAGAGGAGAGGTTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAATATGAGCAAAATCGGGACGTGAGTTCACGAATTCAAGAACTGGAATCTTCTCTAAGTTCTTTAGAGAATGATTTGAAACGGGTACAGAATAAAGAGGCTGAAGCAAAGAAAGCAGCCGAGAAAGCTACTGAAGAGATTAATCAGTTTAAGGAAGAAGCTAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAATGGAAGAAGAGGGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACTCCAAGGAGGCACAGATTGAACAGTTGATCCTGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTAGAACAAATTATCCTTCCAACCGTATCAGATCCTATGGATACTGGTAGCTCAACACCAGGTCTAGTTTTTGACTTTGATCAGCTAAGTAGGGCACTGAAAGATAGGAGACACTCTGACAGGGATAAAATTGAGGTAGAATTTAAGCAAAAAATGGATGCATTGATATCTGAGATGGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTGCTAGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAGCGGAAAGATTCAATGCAGTTAAGCAGAGGAGGTATGAGTTGTTCATGGATGCTTTCAACCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCTCTGGGTGGAACAGCATACTTAAACTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCTCCAACAAAGCGCTTCCGTGATATGGAGCTGTTATCTGGTGGAGAAAAGACTGTTGCTGCACTTGCGTTGCTATTCTCCATCCACAGCTATAAGCCTTCACCGTTTTTCATTTTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCTAAGGTTGCTGGCTTTATTCGTACAAAATCTTGTGAAGGAACGAGAGCTAGTCAGGATGCTGATGGTGGAAGTGGTTTTCAGAGTATCGTGATTTCATTGAAAGACAGCTTTTATGACAAAGCTGAAGCGTTAGTTGGGGTTTACAGGGACTCCGAAAGAGGCTGTTCGAGAACTCTCACATTTGATCTGACTAAATACCGGGAGGCCTAA 3654 0.4195 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYQLASGSEIQFTRTITSAGASEYRIDGNLVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKAEAEEKSAFVYQKKKAVVMERKQKKEQKEEAEKHLRLQDQLKSLKKEHFLWQLFNIENDFVKTTEDLEDEKKSREGVIEELENFEHEASKKKKEQARYLKEITQREKRIAEKSNKLDKSQPELLKLKEEMTRINSKIKKGKKELDKKREERRRHAADIAELQRGIQDLTAKVVDIQEKGRVVGNQLKLDGNDLEEYFRIKEEAGTKTAKLRGEKELLDRQQHADSEAQKNLEENLQQLRNRESELNSQEEQMRARLKKIIDNSAKNKDGLANLKKELRVMQDKHRDSKKKYENLKLKIGEIENQLRELKADRYDNERDARLSQAVETLKRLFQGVHGRMTDLCRPTQKKFNLAVTVAMGRFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGTAKLIFDVIQFDPSLEKAILFAVGNTLVCDDLEEAKVLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLNQEKETIREEIERISPELQKLNDAVDKRNGEILRLENRINVITDRIYKDFSQSVGVSNIREYEENQLKVAQNVAEERLNLSSQLSKLKYQLEYEQNRDVSSRIQELESSLSSLENDLKRVQNKEAEAKKAAEKATEEINQFKEEAKEWKSKSEDCEKEIQEWKKRASAATTNISKLNRLINSKEAQIEQLILQKQEILEKCELEQIILPTVSDPMDTGSSTPGLVFDFDQLSRALKDRRHSDRDKIEVEFKQKMDALISEMERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKAERFNAVKQRRYELFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMELLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRTKSCEGTRASQDADGGSGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYREA 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3494g00003 1217 Gene3D - 578 660 - -
Gabi3494g00003 1217 Coils Coil 307 362 - -
Gabi3494g00003 1217 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gabi3494g00003 1217 Gene3D - 1038 1217 IPR027417 -
Gabi3494g00003 1217 Coils Coil 829 933 - -
Gabi3494g00003 1217 SUPERFAMILY Smc hinge domain 481 682 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gabi3494g00003 1217 Coils Coil 709 746 - -
Gabi3494g00003 1217 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Gabi3494g00003 1217 Coils Coil 1007 1027 - -
Gabi3494g00003 1217 Coils Coil 405 439 - -
Gabi3494g00003 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1200 IPR027417 -
Gabi3494g00003 1217 Coils Coil 170 231 - -
Gabi3494g00003 1217 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Gabi3494g00003 1217 Coils Coil 251 285 - -
Gabi3494g00003 1217 Coils Coil 751 771 - -
Gabi3494g00003 1217 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Gabi3494g00003 1217 PIRSF SMC 8 1214 IPR024704 GO:0005524|GO:0016887
Gabi3494g00003 1217 Gene3D - 8 229 IPR027417 -
Gabi3494g00003 1217 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gabi3494g00003 1217 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1217 - -
Gabi3494g00003 1217 Coils Coil 675 695 - -
Gabi3494g00003 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 328 IPR027417 -
Gabi3494g00003 1217 Coils Coil 454 495 - -
Gabi3494g00003 1217 Gene3D - 496 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3494g00003 Gabi-Chr3494 13667 39106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3494g00003 8 112 Structural Maintenance of Chromosomes family AT5G61460 33.929 4.26e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3494g00003 K06636 - gmx:100785315 1986.07