Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi348g00007 ATGGACGAGAAGATAGACACCGCAGACAAAAAGGTGCTGGTTGATATTGTAAAATTGTCACAAAAAAGAGGCTTGAAGGGTAAACAGGGAGACTGGAAAGAATTCTTGAACATTTATGATAAAAAGTTTGGGGCAGGTTTGAGTGATCCATCAAAGAGGTCCCATGAGATTTTGGCTGCATTTCTAAAGACATTTTCCAAGGAGGATGATTTGAAGTTTTTTGCTAACATCATGCGGCATCATTCAAATCAAGACACACTGGAGCAATTGAAGGATAAATCTCATGATTCCCCTGGGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCATTATATCCATTGGATTATTCTTCACCAATTGATGAGGGATGGGTAATTATAAACCTTAAAAAGAAACCCAAGGTGATGAAGTGTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAGGATGGGACTGAAGCACTAGTCAAAGTCTGTGTGGTAGACCACAATTTAGAGGTCAAAGTAAATGAACTTGTAAAACCCGACAAAGCAATTGCAGACTACAGAACAGAAATTACTGGTGTCTCTTCTCAAGATCTAGAGGCAGTGACATGCTCCTTGGCCAATATACAGAAATCCATGAAGAAGTTGTTGTCAAATGGAACCATATTAGTGGGACACAGTTTACATAACGATCTACGTGTGCTGAAGCTAGATCATGTTAGAGTTGTTGACACTTCATATATCTTCCAATCCTCGGACGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAATGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAACAATGAAACTTGCTCTTGCAAAGATCAAGCATGGTGTTGATACAGCATTTCCGTTGGTTCAGGAGCGTGTTTCAGAAATTGAGATGGCGAAGCTCCTCCTTCACAGGATACCAATTACTGTGAACAGTAAAACTCTACATGAAGTTGTTCCTGGAGACTTCACATTAGAACTGAAGCCTTCGAGGAAAGGTCAAGGAGAAAAATATTCTGCCTTAGCTATCTTTAAGAAACCACAAGAGGCAAATGATGCCTATGAAAACGTCCAAGGCAGCCAATTAAAGGATTCATATGGACGTCCACAGAAACTTGTCACATTTCGGCTAAGTACAGGCATTACTGCCACTCTATTTGTTCGGAAAATGGCAACTGATGATCCTCATGACCTGATTCCATGTAAGAGAGCTTCAGAAGTGAATGAGGTTGTTGATGAAATTTCCAAGAAAGCAAAGACGGATCCTAAAATTGAAGAGGATGCCCTGACATGCTCCAGTAAGTGTGACACTGACACCCACTTGAATGAGATTGAAGCACTGAATCAACGAGTGAAGCAAAGTGATTTGGAGATTGAATCATTGAGAGAACAGTTGAGACAAAAGGATTTTGAAATCTCCATGCTGCATAAAATGGTATCCTCATTAAAAAAGCGAACAAAACAATCCTAG 1524 0.4055 MDEKIDTADKKVLVDIVKLSQKRGLKGKQGDWKEFLNIYDKKFGAGLSDPSKRSHEILAAFLKTFSKEDDLKFFANIMRHHSNQDTLEQLKDKSHDSPGQRLVQVTLQHPLYPLDYSSPIDEGWVIINLKKKPKVMKCTAMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKVNELVKPDKAIADYRTEITGVSSQDLEAVTCSLANIQKSMKKLLSNGTILVGHSLHNDLRVLKLDHVRVVDTSYIFQSSDGSIHRRPSLNSLCQAVLGYEVRENGAPHNCLDDACATMKLALAKIKHGVDTAFPLVQERVSEIEMAKLLLHRIPITVNSKTLHEVVPGDFTLELKPSRKGQGEKYSALAIFKKPQEANDAYENVQGSQLKDSYGRPQKLVTFRLSTGITATLFVRKMATDDPHDLIPCKRASEVNEVVDEISKKAKTDPKIEEDALTCSSKCDTDTHLNEIEALNQRVKQSDLEIESLREQLRQKDFEISMLHKMVSSLKKRTKQS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi348g00007 507 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 305 IPR047021 GO:0004527
Gabi348g00007 507 FunFam Small RNA degrading nuclease 3 136 310 - -
Gabi348g00007 507 SUPERFAMILY Ribonuclease H-like 141 297 IPR012337 -
Gabi348g00007 507 Coils Coil 462 482 - -
Gabi348g00007 507 Gene3D - 137 309 IPR036397 GO:0003676
Gabi348g00007 507 CDD REX1_like 142 293 IPR034922 -
Gabi348g00007 507 SMART exoiiiendus 140 301 IPR013520 -
Gabi348g00007 507 Pfam Exonuclease 142 291 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi348g00007 Gabi-Chr348 138335 144025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi348g00007 121 314 C2H2 Transcription Factor Family AT3G27970 29.224 1.33e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi348g00007 K14570 - gmx:100785565 783.482