Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3487g00005 ATGGGAGATTGGGATCACAATAACCTCGTTCATGAGCTACGACAAGGCATGGAGCTGGCAACGCAGCTCCAAATCTCTCTCCAAGTGCCTTCTACCTCCCCACAAAGCCGTGAGCTTCTGAACGAGAAGATCATAGCTGCATTTGAAAAGGCACTTGCAATGGTGAACTGGAATGGGGTGCAAGTGGGTGAGCCTTCACAAATGCCCACAAGGGTTGCAATGAGAATGTCACAGTCACCACCATTGAGCGCAAGTCCTCGCAGTGAAGACTCTGACAGAGATCTGGAGCAGAGTGCCACTAGAAAGAGGAAGGTCATGCCAAGATGGACAAAACATATCCGAGTTAATCCAGGGATGGAAGTGGAAGGGTCACTTGATGATGGATATTGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAGCCAAGTATCCAAGAGGCTATTACAGATGCACCCACAGAAATGTTCAAGGCTGCATGGCCACAAAGCAAGTGCAAAGATCAGATGAAGACCCAAATATCTTCGAAATCACTTACAGGGAAAAGCACAACTGCACAATGTCCTCCTATGTGGTTCCTCCATCAGGACCACAAGAAAACCAAGAATCAAATTTGAGCAAAGTTCCACAGCATCAAAATGACCAGCAAATTCTTGAGCAGCATTCAAGTGATCATCTAGTTTTGAACCTCCGTGAAGGCCTGAAAATCCTAACAGAGAATCTACATCATGCTCCTGACCAAGTTACTTCAACTTTGCATTTCCCTTCAACTACAAATATAAAAACTGAAGACAAAGTTTTCCCTTCGCCAATGATTGAAAATAACACTGCAGAAAACTTCATCTATCCTTCATATGTGTCCCCTGCCACATCTAGAACAAGCTACTTTTCGGTGTCTCCAAGTGGCGGGAACAGCTTTGTGGGGTACTCAAATTTGTTAAGTTCTGGTTCTGAGATCAATGACATGATCATAGCTGCTACTTCAGCCGCAAACTCTCCAACCGTTGACTTAGAGTTTCCATTTGACCAGTTTCAATTGGACGGTCAAAACTTCACCTTCGATAACCCACCATTCTCCTAA 1080 0.4454 MGDWDHNNLVHELRQGMELATQLQISLQVPSTSPQSRELLNEKIIAAFEKALAMVNWNGVQVGEPSQMPTRVAMRMSQSPPLSASPRSEDSDRDLEQSATRKRKVMPRWTKHIRVNPGMEVEGSLDDGYCWRKYGQKDILGAKYPRGYYRCTHRNVQGCMATKQVQRSDEDPNIFEITYREKHNCTMSSYVVPPSGPQENQESNLSKVPQHQNDQQILEQHSSDHLVLNLREGLKILTENLHHAPDQVTSTLHFPSTTNIKTEDKVFPSPMIENNTAENFIYPSYVSPATSRTSYFSVSPSGGNSFVGYSNLLSSGSEINDMIIAATSAANSPTVDLEFPFDQFQLDGQNFTFDNPPFS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3487g00005 359 MobiDBLite consensus disorder prediction 87 103 - -
Gabi3487g00005 359 ProSiteProfiles WRKY domain profile. 120 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3487g00005 359 SMART WRKY_cls 125 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3487g00005 359 SUPERFAMILY WRKY DNA-binding domain 124 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3487g00005 359 MobiDBLite consensus disorder prediction 192 213 - -
Gabi3487g00005 359 Pfam WRKY DNA -binding domain 126 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3487g00005 359 MobiDBLite consensus disorder prediction 72 103 - -
Gabi3487g00005 359 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 278 IPR044810 GO:0003700
Gabi3487g00005 359 Gene3D WRKY domain 109 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3487g00005 359 FunFam WRKY transcription factor 53 111 188 - -
Gabi3487g00005 359 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3487g00005 Gabi-Chr3487 89476 90872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3487g00005 2 191 WRKY Transcription Factor Family AT5G24110 42.188 6.13e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3487g00005 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3487g00005 - - gmx:100776906 411.764