Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3487g00004 ATGGATGAGAGCTTATCTGATATTTTCCAAGAGACAGAGTTTGGGGACACCAACTTTGGTGGAGAGGATCTCTTTTCCATTTTGGAGAGCCTAGAAGGCTTCAACAATTTTCCTCCCATCGATGAAGCTGTTATAATTACTCCAACTTTGAAAGAAAATGAGCAAAACTCAAGATTGGTTTCTCAGAAGTCAACTTCTTCAAGTGCTCCACAAGATTATGAAACGGAACCCGAAACTGAACCCAAAAGCAAGAGACAGAAACTTGCCCCCACTTCGCCAGAGGAACCAAACCCTGATGGACAACAAAGGATATCTCATATTACTGTTGAACGCAACCGAAGAAAGCAAATGAATGAGCACTTGTCTGTCTTGAGGTCACTTATGCCTTGCTTTTATGTCAAACGAGGAGATCAAGCATCAATAATTGGAGGTGTGGTTAATTACATCAACGAGTTGCAACAAGTGCTACAATGCCTTGAGGCCAAGAAACAGAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGTCCAAGGCCTTCACCACTAAGTCCTCGAAAACCACCCTTGAGTCCTAGAATAAACTTGCCTATTAGTCCAAGGACTCCACAACCAGGTAGCCCTTACAAGCCCAAGTTGCAACAAGGTTACCTTTCCCCTACTATATCCAACTCTCGAGACCCATCTCCTCCTTCTAATTCTTCTTCTTCTGCTTCTTCCATCAACGATAATATCAACGAGCTTGTTGCTAATTCCAAGTCTGCTATCGCCGATGTTGAGGTCAAGTTTTCAGGTCCACACGTTCTTTTGAAAACTGTATCACCACGGATTCCCGGGCAAGCTTTGAGAATAGTATCAGCCCTTGAAGACCTAGCACTCGAAATCCTCCATGTGAGCATTAGCACTGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATTCAGCAAACATTCTGCTAA 1014 0.429 MDESLSDIFQETEFGDTNFGGEDLFSILESLEGFNNFPPIDEAVIITPTLKENEQNSRLVSQKSTSSSAPQDYETEPETEPKSKRQKLAPTSPEEPNPDGQQRISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVNYINELQQVLQCLEAKKQRKVYSDVLSPRLVSSPRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPKLQQGYLSPTISNSRDPSPPSNSSSSASSINDNINELVANSKSAIADVEVKFSGPHVLLKTVSPRIPGQALRIVSALEDLALEILHVSISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3487g00004 337 MobiDBLite consensus disorder prediction 174 242 - -
Gabi3487g00004 337 FunFam Transcription factor SPEECHLESS 93 167 - -
Gabi3487g00004 337 Pfam Helix-loop-helix DNA-binding domain 102 153 IPR011598 GO:0046983
Gabi3487g00004 337 Gene3D - 94 166 IPR036638 GO:0046983
Gabi3487g00004 337 PANTHER TRANSCRIPTION FACTOR FAMA 4 336 IPR044283 GO:0003700|GO:0010052
Gabi3487g00004 337 MobiDBLite consensus disorder prediction 54 104 - -
Gabi3487g00004 337 CDD bHLH_AtFAMA_like 104 175 - -
Gabi3487g00004 337 MobiDBLite consensus disorder prediction 216 242 - -
Gabi3487g00004 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Gabi3487g00004 337 MobiDBLite consensus disorder prediction 75 89 - -
Gabi3487g00004 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 173 IPR036638 GO:0046983
Gabi3487g00004 337 MobiDBLite consensus disorder prediction 180 209 - -
Gabi3487g00004 337 SMART finulus 107 158 IPR011598 GO:0046983
Gabi3487g00004 337 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3487g00004 Gabi-Chr3487 54903 57955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3487g00004 1 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.055 4.83e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3487g00004 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3487g00004 K20558 - gmx:100809717 463.381