Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3485g00012 ATGTCTCGGACATCAAGTGTCCCGCCTGCCTTCCTGTCCATCAAATCGTTGCCTTCTGAGTTCGAGTTTACTAATAAGCCAAACCCTCATCGTGTGGAAAAACATGGAGATGTTAAATTGAGAAGCAGTGATCTGATTGGATCAAAGGGTCCTGAAAATGGTGCACTAGTTGGGGAAGTTTCTAAGGAAGCTCATGAACGTCCTGGTGACATGGATCTTTTTGATGAGGACTCGCCTTATGGTGGAAAACTTAGATCATTAAAAGATAGACCATCAAATGCTGATGAAGACTTGGTATCTGTTTCGTTGCCCCTCCCATCAATTTCAACATCCTCTAGGGAAAGTAGGTGGGGTGATACAACACCTTGTGCTTCAAAGAAGAAGCTTCAATCTTGGCTTCAACTTTCTAATGGGGATTGGGAGCTGGTGAAGATAATAACAACTTCTGGAAATGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAGGGTGAAAGATGAAAATTTGGTACCAGCAAATCCTGATATTCTCGATGGAGTGGATGACCTCATGCAACTCAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCAATATAGATACAATCAAAATATGATCTATACAAAAGCAGGGCCTGTTTTGATTGCCATCAATCCCTTTAAGAATGTTCCTCTGTATGGCAATGACTATATTGAAGCCTACAAGTGTAAAGCGATTGAAAGTCCTCATGTGTATGCAATTACAGACACAGCCATCCGAGAAATGATACGGGATGAAGTTAATCAATCAATAATTATTAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTGGAAGCCTTTGGTAATGGAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAAATTCACTTCAGTGAAACTGGAAAAATATCCGGTGCTAATATTCAAACATTTTTGCTTGAAAAGTCTAGGGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGCGCTGGAGCACCACCGTCTCTTCGGGAGAAGCTAAATCTACAAAGCGTAGAAGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTAATGGTGTTGATGATGCAGAAGAATTTCGCATAGTCAGGGAAGCTCTGGATGTTGTCCATATTAGCAAAGCAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATTTCATTTACTGTGGTTGATAATGAAAATCATATTCAAGCTGTTGAGGATGCAGGGCTCTTCAGCGTTGCCAAGTTGATCGGTTGTGACATTGAAGATCTGAAGTTGACTTTATCAACTCGCAGAATGAAAGTTGGTAATGATAATATTGTCCAGAAATTGACACTATCTCAGGCTATTGATGCGAGAGATGCTTTGGCAAAGTCAATATATGCATGTCTGTTTGATTGGCTGGTTGAACAAATAAACAAATCACTTGCTGTTGGCAAAAGATGCACTGGCAGATCCATCAGTATTCTAGATATCTATGGCTTTGAGTCATTCAAAAGGAACAGTTTTGAGCAGTTTTGCATAAACTATGCAAATGAAAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAGTATATCCAAGATGGCATTGATTGGGCCAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTCGAAAAGAAACCACTGGGGCTACTATCCCTGTTAGATGAAGAGTCCACTTTCCCAAATGGCACGGATTTATCATTTGCTAACAAGCTTAAGCAGCACTTAAATTCTAACTCATGTTTCAAAGGAGAACGAGACAAAGCCTTTTCTGTGTGTCATTATGCAGGAGAGGTCACTTATGATACAACTGGATTCCTGGAGAAGAACAGGGACCTATTGCACTTGGATTCTATCCAACTTTTATCCTCAAGCAAATGTCATCTTCCTCAGATATTTGCATCCAATATGCTTACTCAGTCTGAGAAGCCTGCAGTTGGTCCCTTACACAAGTCAAGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCTACAAAATTCAAGGGACAATTGTTCCAACTGATGCAACGTTTAGAGAGCACTACACCACATTTTATACGGTGCATTAAGCCAAATAACATCCAATCACCTGGATCATATGAGCAAGGCCTTGTCCTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGAATATCAAGATCGGGCTTTCCGACTAGAATGTTTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCATCTCAGGATCCACTAAGTGTTTCAGTTGCTATTCTTCATCAGTTTAACATTTTGCCTGAGATGTATCAAGTTGGCTTCACGAAATTATTTTTCCGAACGGGGCAGATTGGAGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGAGTGCAAAGTTGCTTCAGGGGTTACCAAGCTCGTTGTTATCGCAAGGAGCTTTGGAGAGGAATCACCACTCTTCAATCATTTATTAGGGGAGAGAAAAGAAGAAAGGGATATGCAGCTTTGCTTCAGAGACATAGAGCTGCTGTTATTATACAGAAGCGGATGAAAACAGTATTTGCAAGAAAAAGAATGAAGACTACTATTGATGCTGCAGTTATCATACAATCATTTATTCGCGGTTGGTTGGTCAGAAGATGCTCAGCAGATATAGGATTATTGAAATCGGGAGGCATGAAGACTAATGAGTCAGATGAGGTTCTGGTGAAGTCGTCTTTCCTAGCTGAATTACAACGCCGGGTACTTAAGGCAGAAGCTGCCTTGAGAGAGAAAGAAGAGGAAAATGATATCCTTCATCAACGTCTTCAACAGTATGAGAGCAGATGGTCTGAATATGAATTAAAGATGAAATCCATGGAAGAAGTATGGCAGAAACAAATGAGATCCCTGCAATCTAGCCTATCTATTGCAAAGAAGAGCCTTGCTATGGATGATCCTGAAAGAAACTCAGATGCATCCGTTAATGCAAGTGATGAGAGGGATTACAGCTGTGATATAGGAAGTAATCACAGGCGCCAAGAAAGCAATGACACAAGATCAATGAGTGCAGGTTTGAGTGTTATTAGTCGGTTGGCTGAAGAATTCGAGCAGAGAAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAAGTAAAATCTGGTCAAGTTGAAGCAAGTTTGGACCCAGATAAAGAGCTTAGAAGGTTAAAACAGATGTTTGAGGCTTGGAAAAAGGATTATGGTGCAAGACTGCGTGAAACGAAGCTCATTTTACATAAACTTGGAAATGAAAGTGGTTCAATTGAGAAAGTAAAGAAGTGGTGGGGAAGAAGGAATAGTACAAGGATAAATTGA 3528 0.4025 MSRTSSVPPAFLSIKSLPSEFEFTNKPNPHRVEKHGDVKLRSSDLIGSKGPENGALVGEVSKEAHERPGDMDLFDEDSPYGGKLRSLKDRPSNADEDLVSVSLPLPSISTSSRESRWGDTTPCASKKKLQSWLQLSNGDWELVKIITTSGNESVISLPDGKVLRVKDENLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLIAINPFKNVPLYGNDYIEAYKCKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQSVEDYKYLRQSNCYSINGVDDAEEFRIVREALDVVHISKADQENVFAMLAAVLWLGNISFTVVDNENHIQAVEDAGLFSVAKLIGCDIEDLKLTLSTRRMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRCTGRSISILDIYGFESFKRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLSFANKLKQHLNSNSCFKGERDKAFSVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSSKCHLPQIFASNMLTQSEKPAVGPLHKSSGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNIQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMFHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMYQVGFTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARCYRKELWRGITTLQSFIRGEKRRKGYAALLQRHRAAVIIQKRMKTVFARKRMKTTIDAAVIIQSFIRGWLVRRCSADIGLLKSGGMKTNESDEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDPERNSDASVNASDERDYSCDIGSNHRRQESNDTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDKELRRLKQMFEAWKKDYGARLRETKLILHKLGNESGSIEKVKKWWGRRNSTRIN 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3485g00012 1175 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 Pfam IQ calmodulin-binding motif 857 872 IPR000048 GO:0005515
Gabi3485g00012 1175 Pfam IQ calmodulin-binding motif 927 943 IPR000048 GO:0005515
Gabi3485g00012 1175 Gene3D - 361 420 - -
Gabi3485g00012 1175 Gene3D - 784 852 - -
Gabi3485g00012 1175 MobiDBLite consensus disorder prediction 1060 1074 - -
Gabi3485g00012 1175 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Gabi3485g00012 1175 PANTHER MYOSIN 172 1167 - -
Gabi3485g00012 1175 Gene3D Kinesin motor domain 182 780 IPR036961 -
Gabi3485g00012 1175 MobiDBLite consensus disorder prediction 26 42 - -
Gabi3485g00012 1175 Gene3D - 855 903 - -
Gabi3485g00012 1175 Gene3D - 904 947 - -
Gabi3485g00012 1175 FunFam Unconventional myosin-XIX 549 741 - -
Gabi3485g00012 1175 Gene3D - 547 741 - -
Gabi3485g00012 1175 Gene3D Myosin VI head, motor domain, U50 subdomain 422 719 - -
Gabi3485g00012 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 898 IPR027417 -
Gabi3485g00012 1175 ProSiteProfiles IQ motif profile. 927 954 IPR000048 GO:0005515
Gabi3485g00012 1175 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 Coils Coil 971 1019 - -
Gabi3485g00012 1175 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 MobiDBLite consensus disorder prediction 1036 1077 - -
Gabi3485g00012 1175 SMART iq_5 852 874 IPR000048 GO:0005515
Gabi3485g00012 1175 SMART iq_5 875 897 IPR000048 GO:0005515
Gabi3485g00012 1175 SMART iq_5 924 946 IPR000048 GO:0005515
Gabi3485g00012 1175 SMART iq_5 901 923 IPR000048 GO:0005515
Gabi3485g00012 1175 MobiDBLite consensus disorder prediction 25 95 - -
Gabi3485g00012 1175 FunFam Myosin heavy chain 361 417 - -
Gabi3485g00012 1175 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 CDD MYSc_Myo8 193 839 IPR036022 -
Gabi3485g00012 1175 MobiDBLite consensus disorder prediction 59 95 - -
Gabi3485g00012 1175 MobiDBLite consensus disorder prediction 1038 1052 - -
Gabi3485g00012 1175 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi3485g00012 1175 ProSiteProfiles IQ motif profile. 878 905 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3485g00012 Gabi-Chr3485 48783 69379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3485g00012 7 1173 Myosins gene family AT1G50360 75.768 0.0 1801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3485g00012 - - gmx:100782618 2082.76