Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3485g00006 ATGGATTCGAATTCGATCGACGACGATGCCGTATCGGGCTCGAGGCTCTGCCTAAACGACCCGTTTACGGACGACGAGCTGCGTTCGATTCTGTCGGGGAGCATGCGGAACCGGATCTTGGATTGGGCTGAGATCTTGATGGGTCTGGAAGACAATTCCATTGAGTTCGGGTTTCAGGTGCCGGAATCGGAACGGTACGTCGGAAATCCGGAGGATTATGTGGATGCGGCGGAGTTTGAGGCGTTGCTGCAGACGCTGGGGGAGAGCGACGAAAGTGGGAGGAGGGGAGCCCCGCCGGCGTCGAAGTCGGCGGTGGAAGCGTTACCGACGGTGAAGATTGCGTCAGAGAGTGAGGCTGTGGAATGTGCTATTTGTAAGGATTTGATGGGTGTTGGAGAGGTGGCTAAGAAAATGCCTTGTGGGCATGAGTACCATGGAGATTGTATTGTTCCTTGGTTGAGTTGCAGAAATTCTTGTCCTGTCTGTAGGTTTGAGCTCCCAACGGATGATAAGGAATATGAGGAAGACAGGGTGGTGGTCAACCCTTCTAATGGGGCAGGGTCTTGGGTTTCGGGTTCGGGTGGAGATTCCACCATTTGA 600 0.54 MDSNSIDDDAVSGSRLCLNDPFTDDELRSILSGSMRNRILDWAEILMGLEDNSIEFGFQVPESERYVGNPEDYVDAAEFEALLQTLGESDESGRRGAPPASKSAVEALPTVKIASESEAVECAICKDLMGVGEVAKKMPCGHEYHGDCIVPWLSCRNSCPVCRFELPTDDKEYEEDRVVVNPSNGAGSWVSGSGGDSTI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3485g00006 199 Pfam Ring finger domain 121 163 IPR001841 -
Gabi3485g00006 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 169 IPR013083 -
Gabi3485g00006 199 SUPERFAMILY RING/U-box 121 169 - -
Gabi3485g00006 199 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 167 - -
Gabi3485g00006 199 FunFam E3 ubiquitin-protein ligase RING1-like 86 169 - -
Gabi3485g00006 199 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Gabi3485g00006 199 SMART ring_2 122 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3485g00006 Gabi-Chr3485 28509 29391 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3485g00006 31 180 C3H Transcription Factor Family AT5G01980 48.408 1.23e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3485g00006 - - gmx:100780991 280.411