Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3485g00004 ATGTACATTGCACAAAAAACAAACCCAATTAGCACTCTCTGCTCCTTCCATCTCCGCCGTACCGGAAAAACCATGTCGGAAGCACCGTCTCAGCCACCACTCCCAGCCACCGACGCGCCGCCGCACTGGTGCTACCACTGCGAGAAACGCGTCTCCATCGAAACCACCGTGAATTCCCCCGACGTCATCTGCGGCGAGTGCAAGCACGGCTTCGTCGAATCCATTCCCACACCATCTCTCTCGCGCTCTCGCTCACCTTCCGCATCCTCCGACGATCCTTACTTCGGCTCCCAGTTCCTCCAGGTCCTTCGCCTAATCGCCCAATCGGCGCGTGACGACGACGCGTCTCCCCCGCCGCCGCCGAGTCGCTCCCCGGAGAACGATTTCCTCAGGATCGAGGTCGGCGGCTGGGACAACGACGACGAGGAGGAGGACGACGACGGCGTGGAGTTTCACAACGACGGTGAAGGTGCCGTCGAGGAGCCGGAGGATCGATCCGGTAACGAGGATCCGCACGGAGATGATGAAGATCTGAGGCGATGGAGGCGTGAGCTGCTTCGGCATAGGATTAGGGATTTGGCGACCCGAACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCTGAGATCTTGATGGGTCTGGAAGACAATTCCATTGAGTTCAGGCTTCAGGTGCCGGAATCGGAACGGTACGTCGGAAATCCGGAGGATTATGTGGATGCGGCGGAGTATGAGGCGTTGCTGCAGACTCTGGCGGAGAGCGACGGAAGTGGGAGGAGGGGAGCCCCACCGGCGTCGAAAACGGCGGTGGAAGCGTTACCGACGGTGAAGATTGCCTCAGAAAGTGAGGCTGTGGTGTGTGCTATATGTAAGGATTTGGTGGGTGTTGGAGAGGTGGCTAAGAAAATGCCTTGTGGGCATGAGTACCATGGAGATTGTATTGTTCCTTGGTTGAGTTGCAGAAATTCTTGCCCTGTCTGTAGGTTTGAGCTCCCAACGGATGATAAGGAATATGAGGAAGACAGGGTGGCGGTCAACCCTTCTAATGGGGCAGGGTCTTCGGGTTCGGGTTCGGGTGGAGATTCCACCATTTGA 1095 0.5753 MYIAQKTNPISTLCSFHLRRTGKTMSEAPSQPPLPATDAPPHWCYHCEKRVSIETTVNSPDVICGECKHGFVESIPTPSLSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIEVGGWDNDDEEEDDDGVEFHNDGEGAVEEPEDRSGNEDPHGDDEDLRRWRRELLRHRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQVPESERYVGNPEDYVDAAEYEALLQTLAESDGSGRRGAPPASKTAVEALPTVKIASESEAVVCAICKDLVGVGEVAKKMPCGHEYHGDCIVPWLSCRNSCPVCRFELPTDDKEYEEDRVAVNPSNGAGSSGSGSGGDSTI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3485g00004 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 334 IPR013083 -
Gabi3485g00004 364 FunFam E3 ubiquitin-protein ligase RING1-like 250 334 - -
Gabi3485g00004 364 Pfam zinc-ribbon 42 75 IPR039525 GO:0061630
Gabi3485g00004 364 MobiDBLite consensus disorder prediction 137 151 - -
Gabi3485g00004 364 Pfam Ring finger domain 287 328 IPR001841 -
Gabi3485g00004 364 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Gabi3485g00004 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 168 332 - -
Gabi3485g00004 364 SUPERFAMILY RING/U-box 282 334 - -
Gabi3485g00004 364 SMART ring_2 287 327 IPR001841 -
Gabi3485g00004 364 MobiDBLite consensus disorder prediction 137 176 - -
Gabi3485g00004 364 MobiDBLite consensus disorder prediction 347 364 - -
Gabi3485g00004 364 MobiDBLite consensus disorder prediction 338 364 - -
Gabi3485g00004 364 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3485g00004 Gabi-Chr3485 14698 16028 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3485g00004 198 345 C3H Transcription Factor Family AT5G01980 49.032 2.15e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3485g00004 - - gmx:100780991 475.322