Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3484g00002 ATGTCTAAGAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCATGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGACCCTCCAAATAATATATGCACATTTTATCAAAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGACCACAGTCCTCCACTCCATCTTCTTCAGTATTCGAACACCTGCCCCTGGTTTCAGATTCTGTTATATTTGGTAATACTAGAATTACATCAAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGCAGTCCTTACCTTCATCCCAGTAAACTGGCTCTGGCTCAAGAATTTGAGTATCACGATCTTTTAGGGGAAGAAGATGTTGGTCAATCCATAACTAGTTCACCTTCTGAGCTTTCAATCTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGGAAAATGTCCCCATATTCATGGGGATCTATGTCCCACCTGTGGAAAACACTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGATTTGTGGAAATAAGCAAAAGCATCTTGAGGCATTGAAACAAAGTCAAGAAATTGAATGCAGTGTTTGTCTGGAGCGTGTTCTTTCAAAGCCTACAGCAGGTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTCAATAGCACATTGAGAGCTTGTCCTATCTGTCGCAAGCTATCGTACTTTGTCATTCCAAGTGTCATTTGGTACTCTACAAGTGAAGAAAAACAGGAAATCATTGACAGCTACAAGGCAAAGCTCAAGTCGATTGATTGCAAGCATTTTGACTTTGGGGATGGGAACTGCCCTTTCGGTACAAGTTGTTTCTATAAGCATGCATATCGAGATGGTGGTCTTGAGCAGGTAGCTTTGCGACATCTTGGGGCTGCAGATGGAGACACTGTAATTGCCAAAGACATAAGGTTGTCGGATTTCCTTGCTAACATGCATTTAAGATGA 1074 0.4246 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASRPQSSTPSSSVFEHLPLVSDSVIFGNTRITSNGVATAAEFSLSSSPYLHPSKLALAQEFEYHDLLGEEDVGQSITSSPSELSICSFAAAGNCPRGGKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKICGNKQKHLEALKQSQEIECSVCLERVLSKPTAGERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTSEEKQEIIDSYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGGLEQVALRHLGAADGDTVIAKDIRLSDFLANMHLR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3484g00002 357 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Gabi3484g00002 357 SUPERFAMILY RING/U-box 192 268 - -
Gabi3484g00002 357 PANTHER MAKORIN-RELATED 5 335 IPR045072 GO:0000209|GO:0061630
Gabi3484g00002 357 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Gabi3484g00002 357 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Gabi3484g00002 357 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Gabi3484g00002 357 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Gabi3484g00002 357 SMART c3hfinal6 291 319 IPR000571 GO:0046872
Gabi3484g00002 357 CDD RING-HC_MKRN 202 262 - -
Gabi3484g00002 357 ProSiteProfiles Zinc finger RING-type profile. 204 262 IPR001841 -
Gabi3484g00002 357 SMART ring_2 204 261 IPR001841 -
Gabi3484g00002 357 Pfam Zinc finger, C3HC4 type (RING finger) 204 261 IPR018957 GO:0046872
Gabi3484g00002 357 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Gabi3484g00002 357 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Gabi3484g00002 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 297 IPR013083 -
Gabi3484g00002 357 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Gabi3484g00002 357 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
Gabi3484g00002 357 Gene3D - 33 163 - -
Gabi3484g00002 357 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Gabi3484g00002 357 Gene3D - 1 32 - -
Gabi3484g00002 357 Coils Coil 352 357 - -
Gabi3484g00002 357 ProSiteProfiles Zinc finger C3H1-type profile. 291 320 IPR000571 GO:0046872
Gabi3484g00002 357 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3484g00002 Gabi-Chr3484 60703 81850 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3484g00002 zf-C3HC4 2.2e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3484g00002 K15687 - gmx:100817071 652.899