Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3484g00001 ATGTCTAAGAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCATGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGACCCTCCAAATAATATATGCACATTTTATCAAAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGACCACAGTCCTCCACTCCATCTTCTTCAGTATTCGAACACCTGCCCCTGGTTTCAGATTCTGTTATATTTGAGTTTTCTCTTTCCAGCAGTCCTTACCTTCATCCCAGTAAACTGGCTCTGGCTCAAGAATTTGAGTATCACGATCTTTTAGGGGAAGAAGATGTTGGTCAATCCATAACTAGTTCACCTTCTGAGCTTTCAATCTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGGAAAATGTCCCCATATTCATGGGGATCTATGTCCCACCTGTGGAAAACACTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGATTTGTGGAAATAAGCAAAAGCATCTTGAGGCATTGAAACAAAGTCAAGAAATTGAATGCAGTGTTTGTCTGGAGCGTGTTCTTTCAAAGCCTACAGCAGGTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTCAATAGCACATTGAGAGCTTGTCCTATCTGTCGCAAGCTATCGTACTTTGTCATTCCAAGTGTCATTTGGTACTCTACAAGTGAAGAAAAACAGGAAATCATTGACAGCTACAAGGCAAAGCTCAAGTCGATTGATTGCAAGCATTTTGACTTTGGGGATGGGAACTGCCCTTTCGGTACAAGTTGTTTCTATAAGCATGCATATCGAGATGGTGGTCTTGAGCAGGTAGCTTTGCGACATCTTGGGGCTGCAGATGGAGACACTGTAATTGCCAAAGACATAAGGTTGTCGGATTTCCTTGCTAACATGCATTTAAGATGA 1032 0.4264 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASRPQSSTPSSSVFEHLPLVSDSVIFEFSLSSSPYLHPSKLALAQEFEYHDLLGEEDVGQSITSSPSELSICSFAAAGNCPRGGKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKICGNKQKHLEALKQSQEIECSVCLERVLSKPTAGERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTSEEKQEIIDSYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGGLEQVALRHLGAADGDTVIAKDIRLSDFLANMHLR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3484g00001 343 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Gabi3484g00001 343 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Gabi3484g00001 343 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Gabi3484g00001 343 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Gabi3484g00001 343 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Gabi3484g00001 343 ProSiteProfiles Zinc finger C3H1-type profile. 277 306 IPR000571 GO:0046872
Gabi3484g00001 343 Gene3D - 33 149 - -
Gabi3484g00001 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 284 IPR013083 -
Gabi3484g00001 343 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Gabi3484g00001 343 Gene3D - 1 32 - -
Gabi3484g00001 343 SMART ring_2 190 247 IPR001841 -
Gabi3484g00001 343 ProSiteProfiles Zinc finger RING-type profile. 190 248 IPR001841 -
Gabi3484g00001 343 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Gabi3484g00001 343 SUPERFAMILY RING/U-box 178 254 - -
Gabi3484g00001 343 Pfam Zinc finger, C3HC4 type (RING finger) 190 247 IPR018957 GO:0046872
Gabi3484g00001 343 CDD RING-HC_MKRN 188 248 - -
Gabi3484g00001 343 PANTHER MAKORIN-RELATED 5 321 IPR045072 GO:0000209|GO:0061630
Gabi3484g00001 343 SMART c3hfinal6 122 147 IPR000571 GO:0046872
Gabi3484g00001 343 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Gabi3484g00001 343 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Gabi3484g00001 343 SMART c3hfinal6 277 305 IPR000571 GO:0046872
Gabi3484g00001 343 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3484g00001 Gabi-Chr3484 60703 81850 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3484g00001 zf-C3HC4 2.1e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3484g00001 K15687 - gmx:100817071 622.468