Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3481g00003 ATGACTTTTATGCAATGGGGTTTCTTGGCTTGCTTTCTTTGCTTTTGTGTGGGACTTGAAACCCTATCCCCATCCTGTAACCCCCATGATTTATTGGCCCTGAAGGAATTTGTTGGCAACCTTACAAATGGGTCTATCAAAACATCATGGTCCAATGATGTTGTCTGCTGCAAATGGGTTGGAATTGTCTGTGATAATGTGATTGATGGAGCAGCTGCTAGTAGAGTTACCAAGTTGATTCTCCCTGGAATGGGTCTGAATGGAACAATTTCAAGCTCTTTATCCCATCTAGATAAGCTGAATGTGCTAGATCTTTCGTTCAATCATCTCCATGGTGGATTGCCTTCTGAGCTCTCCAAGTTGAAGCAGTTAAAATTTCTTGACTTGAGCCATAATATGCTGTCAGGGCCAGTTGCTGGGGCACTTTCTGGTTTGCCATCCATTCAGATACTGAATATTTCAAGCAATTTATTTGTTGGAGACCTCTTTAAGTTTGGGAAATTCCAACATCTCCTTGCTCTCAACATAAGCAACAACTCATTCACCGGCCAGTTCAATTCTCAAATTTGCAGCTTTTCCAAAGGTCTTCATATTCTTGATTTATCCACAAATCAATTTGCTGGTGGTCTTGAAGGGTTGGGCAATTGCAGCACATCACTCCAACAGTTGCATTTGGATTCAAATTTATTTTCTGGCCCTCTTCCTGATTCCTTGTATTCCATGTCAGCCTTAGAGCAACTCTCAGTCTCTGTAAACAACTTTTCTGGCTGGTTAAGCAAGCAACTAAGTAAGCTCTCTAGCTTAAAATCTCTAATAGTTTCTGGAAACCAGTTTTCAGAGGAACTTCCAAATGTGTTTGGCAATCTTTTGCACCTAGAACAATTTGTAGCACACTCCAATTTATTTTCAGGAGGATTGCCTTCCACCTTGGCCTTATGCACAAAACTTCGGGTGCTTGATCTTCGAAATAATTCTTTGGCAGGTTCTATTGATCTTAATTTCACTGGGTTGTCTAATCTTTTCACACTGGACCTTGCTAGTAATCATTTTATTGGATCCCTTCCAAATACCTTGTCCTATTGCCATGAATTGACAATGTTAAACCTTGCCAAGAATAAGTTAACTGGCCATATCCCTGAAAACTATGCAAACCTTGCTTCACTTATGATCCTGTCCTTGTCAAACAACAGCTTAGAGAACTTATCTGGCTCGCTTTCTGTACTGCAGCAGTGCAAAAATCTCACCACTCTTATCCTTGCTAAGAATTTCCATGGTGAGGATATTCCTGAAAGTTTAACAGAAGGTTTTCAGAGCCTTATGGTTTTAGCACTTGGAAATTGTGCTCTTAAAGGCCATATTCCTGCTTGGTTATTGAATTGCACAAAATTGGAAGTCCTTGATTTATCATTGAATCATTTGGAAGGTAGCATTCCATCTTGGATTGGTCAGATGGACAGTTTGTTCTACTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAAAAGGTTTGACAGAGTTGAGGGGCCTCATATCCCCAAAATATAGCATATCAAGTTTCTCTGTATCTGCTGTCATTCCTCTCTATGTTAAGAGAAACAAGAGTGCTACTGGGCTGCAATATAAGAAGGCCTCAAGTTTCCCTCCTTCCATATACTTGAGCAATAACAGATTAAGTGGAACAATATGGCCTGAAATTGGTCGTTTAAAAGCACTTCATATCTTAGATTTAAGCAGGAACAAGATCACTGGTACTATTCCTAGCTCTATTTCAGAAATGGAGAATTTGGAAACTTTAGACTTATCTAATAATGATCTCTGTGGAACAATCCCTCCATCATTTAGCAACCTCACATTCTTGTCAAAGTTCAGTGTGGCACACAACCACTTGCAGGGACCAATTCCAACTGGGGGACAATTTTTTAGTTTCCCTAATTCAAGCTTTGAGGGCAACCCGGGGCTTCGTGTGGATTCATCTCGCAACATCGTAAGAAATATGGGCTTGGGGCGCAACATTACTACTGGTTCTGCGAGAAAATTTGGTAGAAGCAGTGTCCTTGGCATAACAATTAGTTTAGGCATAGGCCTTGCACTGTCTCTTGCAATTGTTCTGCTAATAATGTCAAAGAGGCATGAGGATAAGCCAGTTGATAACTTTGATGAGGAGCTAACATTGCCAAACAGGTTACCTGAAGCACATGTTTCTTCAAAATTGGTGCTTTTTCAGAATTCAGATTGCGATGATCTCACTGTTGCAGATTTGTTAAAATCCACAAACAATTTCGACCAAGCAAATATAATTGGTTGTGGTGGGTTTGGTCTTGTATACAAAGCGAATCTTCCAAATGGCGCAACAGCAGCTATCAAGAGACTTTCAGGGTACTGTAGTCAAGTGGAACGCGAATTTCAAGCTGAAGTAGAGGCCCTCTCAAGGGCTCAGCACAAGAACCTTGTTTCTCTTAAAGGTTATTGTCAGCACGTCGATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTGGACTATTGGCTGCATGAGAATGTGGATGGAAATTCAATTCTAAAATGGGATGTAAGACTCAAGATTGCTCAAGGTGCAGCTCATGGATTAGCTTACTTGCACAAGGAGTGCAAACCACATATTGTGCATAGAGATGTTAAATCTAGTAACATACTTTTGGATGATAAATTTGAAGCATATTTGGCTGACTTTGGTCTCTCAAGGCTACTTCAACCCTATGATACTCATGTTACAACAGATTTAGTAGGAACTTTGGGATATATTCCTCCAGAATATAGTCAGGCCCTGAAAGCAACTTTCAAGGGAGATATTTATAGTTTTGGTGTTGTTCTTGTTGAGCTTCTTACTAGTAGAAGGCCTGTAGAAGTCATCATAGGGCAATGTTGCAGGAATCTTGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGGGAGCAGGAAATTTTTGATTCTGCCATTTGGGACAAGGATAAGGAGAAAGAGCTCTTGGAGGTGCTTGCTATTGCTTGTAAATGTCTTGAACAAGATCCAAGGAATAGGCCCCATATTGAAGTAGTTGTTTCATGGCTTGATAGTGTAGGATTGGATGGCTCTCAACAATCATCTTAG 3138 0.4028 MTFMQWGFLACFLCFCVGLETLSPSCNPHDLLALKEFVGNLTNGSIKTSWSNDVVCCKWVGIVCDNVIDGAAASRVTKLILPGMGLNGTISSSLSHLDKLNVLDLSFNHLHGGLPSELSKLKQLKFLDLSHNMLSGPVAGALSGLPSIQILNISSNLFVGDLFKFGKFQHLLALNISNNSFTGQFNSQICSFSKGLHILDLSTNQFAGGLEGLGNCSTSLQQLHLDSNLFSGPLPDSLYSMSALEQLSVSVNNFSGWLSKQLSKLSSLKSLIVSGNQFSEELPNVFGNLLHLEQFVAHSNLFSGGLPSTLALCTKLRVLDLRNNSLAGSIDLNFTGLSNLFTLDLASNHFIGSLPNTLSYCHELTMLNLAKNKLTGHIPENYANLASLMILSLSNNSLENLSGSLSVLQQCKNLTTLILAKNFHGEDIPESLTEGFQSLMVLALGNCALKGHIPAWLLNCTKLEVLDLSLNHLEGSIPSWIGQMDSLFYLDFSNNSLTGEIPKGLTELRGLISPKYSISSFSVSAVIPLYVKRNKSATGLQYKKASSFPPSIYLSNNRLSGTIWPEIGRLKALHILDLSRNKITGTIPSSISEMENLETLDLSNNDLCGTIPPSFSNLTFLSKFSVAHNHLQGPIPTGGQFFSFPNSSFEGNPGLRVDSSRNIVRNMGLGRNITTGSARKFGRSSVLGITISLGIGLALSLAIVLLIMSKRHEDKPVDNFDEELTLPNRLPEAHVSSKLVLFQNSDCDDLTVADLLKSTNNFDQANIIGCGGFGLVYKANLPNGATAAIKRLSGYCSQVEREFQAEVEALSRAQHKNLVSLKGYCQHVDDRLLIYSYLENGSLDYWLHENVDGNSILKWDVRLKIAQGAAHGLAYLHKECKPHIVHRDVKSSNILLDDKFEAYLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTSRRPVEVIIGQCCRNLVSWVFQMKSENREQEIFDSAIWDKDKEKELLEVLAIACKCLEQDPRNRPHIEVVVSWLDSVGLDGSQQSS 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3481g00003 1045 SMART LRR_typ_2 484 508 IPR003591 -
Gabi3481g00003 1045 SMART LRR_typ_2 385 408 IPR003591 -
Gabi3481g00003 1045 SMART LRR_typ_2 594 617 IPR003591 -
Gabi3481g00003 1045 SMART LRR_typ_2 121 144 IPR003591 -
Gabi3481g00003 1045 SMART LRR_typ_2 570 593 IPR003591 -
Gabi3481g00003 1045 SMART LRR_typ_2 265 288 IPR003591 -
Gabi3481g00003 1045 SMART LRR_typ_2 97 120 IPR003591 -
Gabi3481g00003 1045 SMART LRR_typ_2 337 361 IPR003591 -
Gabi3481g00003 1045 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Gabi3481g00003 1045 ProSiteProfiles Protein kinase domain profile. 762 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3481g00003 1045 Pfam Leucine rich repeat 438 497 IPR001611 GO:0005515
Gabi3481g00003 1045 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Gabi3481g00003 1045 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515
Gabi3481g00003 1045 Pfam Leucine rich repeat 572 631 IPR001611 GO:0005515
Gabi3481g00003 1045 PRINTS Leucine-rich repeat signature 594 607 - -
Gabi3481g00003 1045 PRINTS Leucine-rich repeat signature 124 137 - -
Gabi3481g00003 1045 SMART serkin_6 762 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3481g00003 1045 Gene3D Ribonuclease Inhibitor 164 258 IPR032675 -
Gabi3481g00003 1045 Gene3D Ribonuclease Inhibitor 28 163 IPR032675 -
Gabi3481g00003 1045 Gene3D Transferase(Phosphotransferase) domain 1 838 1039 - -
Gabi3481g00003 1045 FunFam Phytosulfokine receptor 1 725 837 - -
Gabi3481g00003 1045 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 68 296 - -
Gabi3481g00003 1045 ProSitePatterns Protein kinases ATP-binding region signature. 768 790 IPR017441 GO:0005524
Gabi3481g00003 1045 Gene3D Phosphorylase Kinase; domain 1 727 837 - -
Gabi3481g00003 1045 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 219 1031 - -
Gabi3481g00003 1045 Gene3D Ribonuclease Inhibitor 361 663 IPR032675 -
Gabi3481g00003 1045 SUPERFAMILY L domain-like 243 642 - -
Gabi3481g00003 1045 ProSiteProfiles Leucine-rich repeat profile. 387 408 IPR001611 GO:0005515
Gabi3481g00003 1045 FunFam Leucine-rich repeat receptor-like protein kinase 838 1044 - -
Gabi3481g00003 1045 Gene3D Ribonuclease Inhibitor 259 360 IPR032675 -
Gabi3481g00003 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
Gabi3481g00003 1045 Pfam Protein kinase domain 764 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3481g00003 1045 FunFam Tyrosine-sulfated glycopeptide receptor 1 334 663 - -
Gabi3481g00003 1045 SMART LRR_sd22_2 97 120 - -
Gabi3481g00003 1045 SMART LRR_sd22_2 385 403 - -
Gabi3481g00003 1045 SMART LRR_sd22_2 594 620 - -
Gabi3481g00003 1045 SMART LRR_sd22_2 313 334 - -
Gabi3481g00003 1045 SMART LRR_sd22_2 570 593 - -
Gabi3481g00003 1045 SMART LRR_sd22_2 121 147 - -
Gabi3481g00003 1045 SUPERFAMILY L domain-like 26 307 - -
Gabi3481g00003 1045 SUPERFAMILY Protein kinase-like (PK-like) 747 1033 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3481g00003 Gabi-Chr3481 61647 64784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3481g00003 8 653 Miscellaneous Gene Families AT1G17240 43.223 3.45e-158 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi3481g00003 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3481g00003 - - gmx:100791334 1636.7