Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3480g00018 ATGGCTGATTCTTCCTTTGAAGCTGACTTCTACCCCTCAAGCCACCAGAAAAAACACTATCCAACACCAGTGAGTTTTCGCAGTAGTGTGTCTGGCTCAAACTCTTTCATACCATCAAGCTCTCGAAGCAGTGCTACTTCTAGAAGCAGAAGAGCTCGCCGCAACAGAATTCCTACCACACCATTTGCTTCAGATGATGACCGTTCATGGCAAGAAGAGGTTTCATGGAAGTTTGGGGCAAAAGGGTTGCGTGAGTATAGCACAAACTTTAGTTCTGTTATGAGTCCATGGCCAGCCAGCACTGAACACAGTCGTGTATTTCATCAATCAGCAAATGACTATTACCTTTCAAGAACAGGTGGTGGGGTTAGAGGCATAACAAATTCATCTTATGAACATTCTGGTTATGGAAGAGTTGAGCTTCAGAGCTATGTTGCTAGGGACATTGATCATAGTCAAGGGTTCTCAAAGTTGGGGATCATCAAAGAGAGGAGTGGTGGAAAAGGTAGGAGTAGTCCATTGGCTGAGGAAGATGAGCTTAGTATGAAAGATTATAGCATAACAGATGAACACAGTGTTAGTAAGGATGTTCTTGATCTTGAACTATCATATATTAGACATGATCATAGTGGTTATGGACTAACATCACATGGTAGTCAAATTTATGGAATTGGTGGTGGTGGTGGTTATAGTCACCATGACACTGAAAAGGTTTCAGGATATGATGAAGAAGAGGAGGAGGATATTATGGATGAGGAAGATGCAGTGCCTCCAAAAACAGTTGGGCTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGGTGCTTGTGTTTGTGGGATGTTTAGGGGCTCTCATAAATGGAGGGTCACTTCCTTTTTATTCTTATCTTTTTGGTGACTTGGTCAACAAGCTTTCAGCAGGAGCAGTCAATGACAATACCCAAATGATGAAGGATGTTAATAAGATATGCTTATATATGACCGGGTTAGCTGCAGTTGTGGTAGTTGGAGCATATTTGGAGATCACATGTTGGAGGTTAGTGGGGGAAAGATCTGCTCAAAGAATAAGAACTGAGTACCTAAGAGCAATTCTTCGACAGGACATTAGTTTTTTTGATACAGATATCAACACTGGTGATATTATGCATGGAATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCCCACTTCATTCATCATCTATTTACATTCATATGTGGGTATGCAGTTGGGTTTAAAAGATCATGGAAAATTTCTCTGGTGGTATTCTCAGTTACCCCATTGACAATGTTCTGTGGTATGGCTTATAAAGCACTTTATGGTGGTCTAGCATCAAAAGAGGAAGCTTCTTATAGGAGTGCTGGTAAAGTTGCGGAGCAGGCAATCAGTTCAATTAGGACAGTGTTTTCTTTTGTTGCAGAAAGTCAATTGGCTACAAAATATGCTGAATTACTTCAAAAATCATCCCCAATTGGGGCAAAAATTGGTTTTGCTAAGGGTGCAGGCATGGGTGTTATATATTTAGTAACTTATTCAACATGGGCCTTGGCTTTCTGGTATGGCTCTATCTTAATTTCCAAGAATCAACTTAATGGAGGTGCAGCTATTGCTTGTTTCTTTGCTGTCAATGTAGGGGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGTACTGTTGCAGCAAGCCGTGTATTCTATGTTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGCAGGAAGCTTTCCACTGTTCGTGGAAGGATTGAGTTAAAAAACGTTAGATTTGCATACCCATCTCGTCCTGATTCTATGATACTTAATTCCCTTAGTTTGGTATTTCCATCTTCAAAAACTTTGGCATTGGTTGGTGCCAGTGGAGGGGGCAAGTCCACTATCTTTGCTCTCATAGAAAGATTTTATGACCCTGTTGAAGGGATTGTTACCTTGGACGGTCATGACTTGAGGACACTGCAAGTAAAATGGCTAAGAGATCAGATTGGGATGGTTGGTCAGGAGCCAATTCTCTTTGCCACATCTATACTAGAAAATGTGATGATGGGGAAAGATAATGCCACCAAGGAAGATGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAACTTCATCTCTAACCTACCACTAGGCTATGACACTCAGGCTGGAGATAGGGGTACAAAACTCTCAGGAGGTCAAAAGCAGCGAATTGCATTGGCTAGAGCAATGATCAAAGAACCTAAAATCCTTATTTTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAATCTGCAGTCCAAAAGGCCATTGACAAGATTTCTGCAGGAAGAACAACCATTGTCATTGCTCATAGGATAGCAACAGTGAGGAACGCTCATGCCATTGTGGTTCTTGAACAAGGTACTGTCACTGAGATTGGTGACCATCGCCAGCTTATGGGGAAAGCTGGAACATACTACAACCTTGTCAAGCTTGCAACCGAAGCGGGTTCAAAATCACTCTCTAAAGAAAATGGCATGCAAAAAGACAATGATTTATCCATCTATGACAAATCTGTTCCTGATGTATCAAGATCAAGATATGAAGTTGATATCTCAAGGTCTAAAAACTTAAAGACTACGCAGGAGGAAAAACAAGAAGAGGTGGAAGATAAGCAAAGCAAAAAGCCAAGAAAATTCAGACTTTCTGAGGTATGGAAATTGGCAAAGCCAGATATTGTGATGCTATTTTCAGGATTTCTTCTGGGAATGTTTGCAGGTGCTTTTCTGTCCCTTTTTCCATTGGCTTTAGGCATATCCCTTGGAGTATATTTTGAAAATGACACTGAAAAGATGAAAAGAGAAATCGGGTACCTTTGTTTCGCACTTGTTGGACTTGGATTTGGTTGTATACTTTCCATGACAGGACAGCAAGGTTTTTGTGGCTGGGCTGGATCAAAGCTGACACTGAGGGTTAGAGACCTATTGTTTCAATCCATACTGAAACAAGAACCCGGTTGGTTTGATTTTGACGAAAACTCCACTGGTGTATTGGTTTCAAGACTCTCAATAGACTGTGTGAGCTTTCGTTCAGTGCTTGGTGACAGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGCTTCATTTTACTTTAATTGGAGACTAACCCTTTTAGCAGCAGCTATAACTCCTTTTGCTCTTGGTGCTAGCTACATAAACTTGATCATAAACGTTGGGCCACGAATTGATAACGACTCTTATGCCAGAGCTAGCAATATTGCTTCTGGTGCAGTGTCAAACATAAGGACAGTGGCTACATTTTCAGCACAGGAACAGATAGTCAAGTCCTTTGATAGAGCCCTATCAGAACCTAGGAAAAAATCATTAAAAAGTTCACAAATTCAAGGTTTTACATTTGGTTTCTTTCAAGGAGCCATGTATGGAGCTTACACCTTGACTCTTTGGTTTGGTTCCTACCTAGTAGAACATGACAAAGCAAAATTTGTGCAGGTGTTTAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTGGGACAACTAGCTGGTTTAGCACCAGATACTTCCATGGCTGCCACAGCAATTCCTGGAGTTCAAGATATCATAAATCGTAAGCCACTAATAGCCAAGGACGGAACAAAAAATAAGAAAGTAGATAGATCAAAACCGTTCAGAATAGAATTCAAAATGGTGACATTTGCATACCCTTCTAGGCCTGGGGTGACTGTGTTGAGAGATTTCTGTTTGAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGGCCAAGTGGATCAGGAAAATCAACTGTCATATGGCTGACACAGAGGTTCTATGATCCAGATCAAGGAAAGGTGATGATGAGTGGGATAGATTTGAGGGAGATTGATGTGAAATGGTTAAGGAGGCAAGTAGCTTTGGTGGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGATAATATTGCATTTGGGGACCCAAATGCTTCATGGGCTGAAATTGAAGCTGCTGCAGTGGAGGCTTACATGCACAAGTTCATCAGTGGCCTTCCTCAGGGTTATGAAACCCAGGTTGGTGAAAGCGGGGTCCAGTTATCAGGTGGCCAGAAACAAAGAATTGCTATAGCAAGGGCCATATTGAAGAAATCAAGGGTGCTTCTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAAATGCCTTTAAGAATGTTTCAAAAGAGGCAACAACCATAATAGTTGCTCACCGTCTTTCCACAATTAGAGAAGCTGAAAAGATAGCAGTTATGAGAAATGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATCCTTCAAAATGGTTTGTATACTAGCCTAGTTCGAGCTGAGACCGAAGCCAATGTCTTTGCTTGA 4473 0.4185 MADSSFEADFYPSSHQKKHYPTPVSFRSSVSGSNSFIPSSSRSSATSRSRRARRNRIPTTPFASDDDRSWQEEVSWKFGAKGLREYSTNFSSVMSPWPASTEHSRVFHQSANDYYLSRTGGGVRGITNSSYEHSGYGRVELQSYVARDIDHSQGFSKLGIIKERSGGKGRSSPLAEEDELSMKDYSITDEHSVSKDVLDLELSYIRHDHSGYGLTSHGSQIYGIGGGGGYSHHDTEKVSGYDEEEEEDIMDEEDAVPPKTVGLFSLFRYSTKWDWVLVFVGCLGALINGGSLPFYSYLFGDLVNKLSAGAVNDNTQMMKDVNKICLYMTGLAAVVVVGAYLEITCWRLVGERSAQRIRTEYLRAILRQDISFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHLFTFICGYAVGFKRSWKISLVVFSVTPLTMFCGMAYKALYGGLASKEEASYRSAGKVAEQAISSIRTVFSFVAESQLATKYAELLQKSSPIGAKIGFAKGAGMGVIYLVTYSTWALAFWYGSILISKNQLNGGAAIACFFAVNVGGRGLALALSYFAQFAQGTVAASRVFYVIERIPEIDPYSPEGRKLSTVRGRIELKNVRFAYPSRPDSMILNSLSLVFPSSKTLALVGASGGGKSTIFALIERFYDPVEGIVTLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKDNATKEDAIAACIAADAHNFISNLPLGYDTQAGDRGTKLSGGQKQRIALARAMIKEPKILILDEPTSALDAESESAVQKAIDKISAGRTTIVIAHRIATVRNAHAIVVLEQGTVTEIGDHRQLMGKAGTYYNLVKLATEAGSKSLSKENGMQKDNDLSIYDKSVPDVSRSRYEVDISRSKNLKTTQEEKQEEVEDKQSKKPRKFRLSEVWKLAKPDIVMLFSGFLLGMFAGAFLSLFPLALGISLGVYFENDTEKMKREIGYLCFALVGLGFGCILSMTGQQGFCGWAGSKLTLRVRDLLFQSILKQEPGWFDFDENSTGVLVSRLSIDCVSFRSVLGDRFSVLLMGLSSAAVGLGASFYFNWRLTLLAAAITPFALGASYINLIINVGPRIDNDSYARASNIASGAVSNIRTVATFSAQEQIVKSFDRALSEPRKKSLKSSQIQGFTFGFFQGAMYGAYTLTLWFGSYLVEHDKAKFVQVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPGVQDIINRKPLIAKDGTKNKKVDRSKPFRIEFKMVTFAYPSRPGVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMSGIDLREIDVKWLRRQVALVGQEPALFAGSIRDNIAFGDPNASWAEIEAAAVEAYMHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQNAFKNVSKEATTIIVAHRLSTIREAEKIAVMRNGEVVEYGSHDTLILQNGLYTSLVRAETEANVFA 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3480g00018 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 603 839 IPR003439 GO:0005524
Gabi3480g00018 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 926 1210 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3480g00018 1490 PANTHER ABC TRANSPORTER B FAMILY 242 839 IPR039421 -
Gabi3480g00018 1490 CDD ABC_MTABC3_MDL1_MDL2 1246 1482 - -
Gabi3480g00018 1490 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1097 1237 - -
Gabi3480g00018 1490 SUPERFAMILY ABC transporter transmembrane region 912 1226 IPR036640 GO:0005524|GO:0016020
Gabi3480g00018 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1246 1482 IPR003439 GO:0005524
Gabi3480g00018 1490 CDD ABC_6TM_Pgp_ABCB1_D2_like 913 1228 - -
Gabi3480g00018 1490 Gene3D - 601 853 IPR027417 -
Gabi3480g00018 1490 MobiDBLite consensus disorder prediction 881 901 - -
Gabi3480g00018 1490 Pfam ABC transporter transmembrane region 924 1194 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3480g00018 1490 Pfam ABC transporter transmembrane region 278 551 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3480g00018 1490 Gene3D ABC transporter type 1, transmembrane domain 230 314 IPR036640 GO:0005524|GO:0016020
Gabi3480g00018 1490 FunFam Multidrug resistance protein 1, 2, 3 601 854 - -
Gabi3480g00018 1490 Gene3D ABC transporter type 1, transmembrane domain 325 1214 IPR036640 GO:0005524|GO:0016020
Gabi3480g00018 1490 FunFam ABC transporter B family member 1 1235 1484 - -
Gabi3480g00018 1490 CDD ABC_6TM_Pgp_ABCB1_D1_like 279 576 - -
Gabi3480g00018 1490 MobiDBLite consensus disorder prediction 1 66 - -
Gabi3480g00018 1490 Pfam ABC transporter 1265 1412 IPR003439 GO:0005524
Gabi3480g00018 1490 SMART AAA_5 1273 1459 IPR003593 GO:0016887
Gabi3480g00018 1490 SMART AAA_5 630 816 IPR003593 GO:0016887
Gabi3480g00018 1490 MobiDBLite consensus disorder prediction 18 46 - -
Gabi3480g00018 1490 Pfam ABC transporter 621 770 IPR003439 GO:0005524
Gabi3480g00018 1490 CDD ABC_MTABC3_MDL1_MDL2 603 840 - -
Gabi3480g00018 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 839 IPR027417 -
Gabi3480g00018 1490 ProSitePatterns ABC transporters family signature. 1385 1399 IPR017871 GO:0005524|GO:0016887
Gabi3480g00018 1490 SUPERFAMILY ABC transporter transmembrane region 260 588 IPR036640 GO:0005524|GO:0016020
Gabi3480g00018 1490 Gene3D - 1240 1488 IPR027417 -
Gabi3480g00018 1490 Coils Coil 882 902 - -
Gabi3480g00018 1490 ProSitePatterns ABC transporters family signature. 742 756 IPR017871 GO:0005524|GO:0016887
Gabi3480g00018 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1242 1481 IPR027417 -
Gabi3480g00018 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 279 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3480g00018 Gabi-Chr3480 90338 102620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3480g00018 249 1483 Calmodulin-binding Proteins AT2G36910 40.523 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3480g00018 K05658 - gmx:100816700 2272.66