Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3480g00016 ATGGACGACGACGACGAGATCCAGTCACACCCGTCGCCGGCGAGCGGATCTCCGGCGTCTTCCCCGAGGGAGAATGGTAGGATAACGGTGACGGTTGCGGCGCCGGCGCCGCAGCCGCCTCCGGCGGCGAACAGCTTGGCATTAGCGCTTCCGATTCAGCAGCAGCCGAGGGGAAACAACGGCGGCGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTGCTGATCGACGCGTGGGGAGAGAGGTATCTGGAACTGAGCAGGGGGAATCTGAAGCAGAAGCACTGGCAGGAGGTGGCGGAGATCGTGAGCGGCAGGGAGGACTACACGAAGGCGCCGAAGACCGACATCCAGTGCAAGAACCGGATCGACACGGTGAAGAAGAAGTACAAATCGGAAAAGGCGAAGATCGCTGCCGGAGGCGGCGGCGCAACCAGTAAGTGGCCGTTCTTCGAGAGATTAGAACAGCTGATCGGCCCTACCGCCAAGATCCCCGGCGTCGCCGGAACCAGCGGCGTCGGGAACAGCAATTTGCAGCAGCAGAAAGTGCCGTTAGGGATTCCGGTAGGAATTCGCGGCGGCGCGAATCAGTATCATCCTCAAAAGCATCAGCCGCCGCCGCCGCAGCAACAGCAACAGGTTCAGTTGAAGAACCAGAAGATTCAGTTCCGGCGGCGTGCTCCTACGGTGGATTCCGATTCATCGGAAAGAGAAGTGTCGTCGCCGGTTTCTAGCGACAGTTTTCCGCCGGAAAGCTATGAGAGGAAGAGGCCGAGGGTGATGAATTCGAATTCAGTGAAAGGAAGGGAAGGAGTAAGAAAGGGGAAGGGTTGGGGTAGTGCGGTGAGGGAACTGACTCAGGCGATTCTCAAGTTTGGTGAGGCTTACGAGCAAGCAGAGAGCTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCCAAGGACTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAGACACAGTTGGAGATTTCTCAGCTCAAGCTTGGGAGAAAAGGTGGCAACTCAAGCAATCACCATAGCAGCAACAACAACAACAAACATAACAATAATAGTGACAGTGAGTGA 1110 0.5703 MDDDDEIQSHPSPASGSPASSPRENGRITVTVAAPAPQPPPAANSLALALPIQQQPRGNNGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWQEVAEIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGGGGATSKWPFFERLEQLIGPTAKIPGVAGTSGVGNSNLQQQKVPLGIPVGIRGGANQYHPQKHQPPPPQQQQQVQLKNQKIQFRRRAPTVDSDSSEREVSSPVSSDSFPPESYERKRPRVMNSNSVKGREGVRKGKGWGSAVRELTQAILKFGEAYEQAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGGNSSNHHSSNNNNKHNNNSDSE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 342 369 - -
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 10 27 - -
Gabi3480g00016 369 Gene3D - 69 134 - -
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 236 250 - -
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 210 224 - -
Gabi3480g00016 369 Pfam Myb/SANT-like DNA-binding domain 66 159 IPR044822 -
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 344 369 - -
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 169 280 - -
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 252 279 - -
Gabi3480g00016 369 MobiDBLite consensus disorder prediction 1 67 - -
Gabi3480g00016 369 FunFam trihelix transcription factor ASIL2 69 134 - -
Gabi3480g00016 369 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 35 346 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3480g00016 Gabi-Chr3480 70402 72094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3480g00016 1 354 Trihelix Transcription Factor Family AT3G14180 49.312 2.97e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi3480g00016 Myb_DNA-bind_4 2.3e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3480g00016 - - gmx:100812599 470.7