Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3480g00006 ATGGCTAATGATGGAGACAAAAGCAATGATTTTTATGCGATTCTGGGTTTGAATAAGGAGTGCACTGAATCAGAGCTAAGGAATGCCTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCATCCGGGAATTCCAAGTTCGTGGAAGAAGCTAAGAAGAAATTCCAAGCAATCCAACAAGCCTATTCTGTTTTATCTGACACGAACAAGAGGTTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGAACGAAATGGTAACGATGATGAGTCAGACTCAATCAAATCAGGAAAATGGAAAGGAGAGTTTTGAGGAGTTGCAGCATCTGTTTGAAGATATGTTTCAAGCGGATATTGGATTAGATGGAAGCACCTCTCTTACTGCTGCTGGTTGCTCTGCTTCATCTAAGTATATGAGTTATAGTGAAAGTTCTAATTCAAATAAACGCAATTCCACTGAAATGAATTTTGGGAAGGCAGAGGATTCTTCTGACTTCAATGCCAGTTACCAGAACTTCTGTTTAGGGGTGAAAAACCTCCAAGATATCAAGAAGGGAAAAGGAGGAATTCCAGGAGGAGGTAGTAGTAGTAGACAGAGAAAAGGCAGAAAGCAAAAAATCTCATATGACAATGATGTTTCCTCTAGTGACTACCTTGGAATTTCCTCTAAGTAA 711 0.4065 MANDGDKSNDFYAILGLNKECTESELRNAYKKLALKWHPDRCSASGNSKFVEEAKKKFQAIQQAYSVLSDTNKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTQSNQENGKESFEELQHLFEDMFQADIGLDGSTSLTAAGCSASSKYMSYSESSNSNKRNSTEMNFGKAEDSSDFNASYQNFCLGVKNLQDIKKGKGGIPGGGSSSRQRKGRKQKISYDNDVSSSDYLGISSK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3480g00006 236 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Gabi3480g00006 236 PRINTS DnaJ domain signature 53 73 IPR001623 -
Gabi3480g00006 236 PRINTS DnaJ domain signature 73 92 IPR001623 -
Gabi3480g00006 236 PRINTS DnaJ domain signature 30 45 IPR001623 -
Gabi3480g00006 236 PRINTS DnaJ domain signature 12 30 IPR001623 -
Gabi3480g00006 236 CDD DnaJ 10 70 IPR001623 -
Gabi3480g00006 236 PANTHER PUTATIVE, EXPRESSED-RELATED 3 185 - -
Gabi3480g00006 236 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Gabi3480g00006 236 Gene3D DnaJ domain 7 136 IPR036869 -
Gabi3480g00006 236 MobiDBLite consensus disorder prediction 195 236 - -
Gabi3480g00006 236 Pfam DnaJ domain 10 78 IPR001623 -
Gabi3480g00006 236 SMART dnaj_3 9 73 IPR001623 -
Gabi3480g00006 236 SUPERFAMILY Chaperone J-domain 8 80 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3480g00006 Gabi-Chr3480 14788 18394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3480g00006 12 78 C2H2 Transcription Factor Family AT1G74250 44.118 5.41e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3480g00006 - - lang:109338829 348.977