Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3480g00005 ATGGCTAATGATGGAGACAAAAGCAATGATTTTTATGCGATTCTGGGTTTGAATAAGGAGTGCACTGAATCAGAGCTAAGGAATGCCTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCATCCGGGAATTCCAAGTTCGTGGAAGAAGCTAAGAAGAAATTCCAAGCAATCCAACAAGCCTATTCTGTTTTATCTGACACGAACAAGAGGTTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGAACGAAATGGTAACGATGATGAGTCAGACTCAATCAAATCAGGAAAATGGAAAGGAGAGTTTTGAGGAGTTGCAGCATCTGTTTGAAGATATGTTTCAAGCGGATATTGGATTAGATGGAAGCACCTCTCTTACTGCTGCTGGTTGCTCTGCTTCATCTAAGTATATGAGTTATAGTGAAAGTTCTAATTCAAATAAACGCAATTCCACTGAAATGAATTTTGGGAAGGCAGAGGATTCTTCTGACTTCAATGCCAGTTACCAGAACTTCTGTTTAGGGACAGGTGAAAAACCTCCAAGATATCAAGAAGGGAAAAGGAGGAATTCCAGGAGGAGGTAG 624 0.4151 MANDGDKSNDFYAILGLNKECTESELRNAYKKLALKWHPDRCSASGNSKFVEEAKKKFQAIQQAYSVLSDTNKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTQSNQENGKESFEELQHLFEDMFQADIGLDGSTSLTAAGCSASSKYMSYSESSNSNKRNSTEMNFGKAEDSSDFNASYQNFCLGTGEKPPRYQEGKRRNSRRR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3480g00005 207 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Gabi3480g00005 207 CDD DnaJ 10 70 IPR001623 -
Gabi3480g00005 207 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Gabi3480g00005 207 Pfam DnaJ domain 10 78 IPR001623 -
Gabi3480g00005 207 SUPERFAMILY Chaperone J-domain 8 80 IPR036869 -
Gabi3480g00005 207 PRINTS DnaJ domain signature 73 92 IPR001623 -
Gabi3480g00005 207 PRINTS DnaJ domain signature 12 30 IPR001623 -
Gabi3480g00005 207 PRINTS DnaJ domain signature 53 73 IPR001623 -
Gabi3480g00005 207 PRINTS DnaJ domain signature 30 45 IPR001623 -
Gabi3480g00005 207 SMART dnaj_3 9 73 IPR001623 -
Gabi3480g00005 207 MobiDBLite consensus disorder prediction 152 186 - -
Gabi3480g00005 207 MobiDBLite consensus disorder prediction 152 207 - -
Gabi3480g00005 207 Gene3D DnaJ domain 7 136 IPR036869 -
Gabi3480g00005 207 PANTHER PUTATIVE, EXPRESSED-RELATED 3 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3480g00005 Gabi-Chr3480 14788 18394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3480g00005 12 78 C2H2 Transcription Factor Family AT1G74250 44.118 3.87e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3480g00005 - - lja:Lj3g3v2576120.1 350.132