Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3479g00001 ATGGCATCGCCAGCAGAACTAAGCATGTATTTCAAACCTCATAGCTATTCCATGCTGCTGAAATCATTTGGAGTTCAAACTGATCAGACCTACAAGCTCGAAGAGTTCCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGACGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCCGTGGAGCATTCAAGAATGCAACTTCATGCCTTCAGATCAAATCAAGGCGAAAGGCCAGTTCTGGAAGAATTCATACCAATAAAGCATTCAAACTCCCAAGAACGCACTGAGATGGCATCAAACATATCGGATAAGGTGAATTGGATGACATCTGCCCAATTATGGGGCCAAGCAAGCGAAGAAACCAAACCACAATCCGCAATTACAATCCCTAAAGAAGCTGATATTGGCTTCAGCATAAGCCCTAAGCTAACTCTAGACAACAAACATAGGAATGGTGGAGCCTTTTCACCATTCTCAAGAGAACGAAACTCCTCCCAAGTATTACGGGTTCTTCCTGAGTTGTCCCTTGCCTCTTCTGAGAAAGAAATTGAGGAGAAGAAATGCGAAAAGACAGAAAATTTTGGAGTGGTTGTAGATCAAGGGAAAGTTGCTGCAGTTTCATCTGAGGCAAAAACAAACACCACCACCACGACTAGCCAAACTCATAGGAAAACAAGAAGGTGCTGGTCACCAGACTTGCACCGTCGATTTGTTAATGCTCTTCAAACGCTCGGTGGATCTCAAGTGGCAACCCCAAAACATATAAGGGAGTTGATGAAGGTTCATGGTTTGACAAATGATGAAGTTAAAAGTCATCTCAAGAAATATAGGCTTCACACTAGAAGACTAAGTCCAAGCTTACAAACAGGAGCACCCACACCCCAGCTCGTAGTCCTAGGAGGAATTTGGGTCCCACCAGAATATGCCACGGCGGCAGCAGCAGGCACCTCCGCCCTCTATGCCCTGCACCCGCCGCCACCGCTCTACTGTGCGGCCACCCCAGTACCCCAACAATTCTACACTGCTGCGCCGTCGCAGTCTGCACTGGCGCCACCTCCACACCACCACGCCCTCCACCATCACCTTCACCTGTATAAGACTGCGCCGCATCCTGAAAGCTCTCCAGAATCCGACGGCGGCAACCGGTCAGAGAGCATAGAGGATGGGAAGTCAGAGAGTAGCAGCTGGAAGGACGAGAGTGGAGAGAACAAAGGAAAGATAAAGGGGTTGGCTGCACTTAGAGAAGAAGGGGAAGAGAGCACCGGGAGTGAGATCACTCTGAAATTCTAG 1305 0.4858 MASPAELSMYFKPHSYSMLLKSFGVQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEHSRMQLHAFRSNQGERPVLEEFIPIKHSNSQERTEMASNISDKVNWMTSAQLWGQASEETKPQSAITIPKEADIGFSISPKLTLDNKHRNGGAFSPFSRERNSSQVLRVLPELSLASSEKEIEEKKCEKTENFGVVVDQGKVAAVSSEAKTNTTTTTSQTHRKTRRCWSPDLHRRFVNALQTLGGSQVATPKHIRELMKVHGLTNDEVKSHLKKYRLHTRRLSPSLQTGAPTPQLVVLGGIWVPPEYATAAAAGTSALYALHPPPPLYCAATPVPQQFYTAAPSQSALAPPPHHHALHHHLHLYKTAPHPESSPESDGGNRSESIEDGKSESSSWKDESGENKGKIKGLAALREEGEESTGSEITLKF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3479g00001 434 FunFam Two-component response regulator 225 289 - -
Gabi3479g00001 434 NCBIfam myb-like DNA-binding domain, SHAQKYF class 229 284 IPR006447 GO:0003677
Gabi3479g00001 434 Gene3D - 228 286 - -
Gabi3479g00001 434 Coils Coil 33 53 - -
Gabi3479g00001 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 286 IPR017930 -
Gabi3479g00001 434 MobiDBLite consensus disorder prediction 372 434 - -
Gabi3479g00001 434 SUPERFAMILY Homeodomain-like 226 287 IPR009057 -
Gabi3479g00001 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 402 IPR044787 GO:0003700|GO:0006355
Gabi3479g00001 434 MobiDBLite consensus disorder prediction 386 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3479g00001 Gabi-Chr3479 33136 40021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3479g00001 1 434 G2-like Transcription Factor Family AT2G03500 48.140 8.61e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3479g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3479g00001 - - gmx:100815048 556.214