Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3478g00001 ATGCCTTTTATAACCACCACCAACACCGTCACCGTCACCGTCACCGTTATCTTCTTTTTCTTATTCATGCTCCCGAGCACGCTCTCACAGAACACAACCTTCAACTTCTCATCCTTCACCCTCCGCAACATCACACTCCTCGGCGACTCCTTCCTCCGAAACGGCGTCGTAGGCCTCACCCGCTCCACCACCGTTCCCGCTTCCAGCGCCGGTTCATTCATCTACAACAACCCCATCAACACCACCACCTTCACCACAACCTTCTCCTTCTCCATCACCAACACCACCGGTTCCTCCGGTAACGGCTTCGCCTTCTTCCTCTCCCCATTCAACCGCCTCCTCGGCATCCCCGGTTCACTCCCCAACTCCTCCGAACCGAACCGGTTCGTCGCGGTCGAGTTCGACACCCGGTTCAACCACGTTGGTTTGGACTTAAACACCTTGGACCCGGTTCGAACCGATGATTTAACCCTTCAGGGGATTGATCTCAAGAGTGGGAAGTTAATCACTTCTTGGATTGATTACAATTCTGATAAGAAAAAGCTCAGTGCTTTCTTAACCTATTCCGGTTCGAGTAATTCTTCCAAGCCTGAAAAACCGGTTTTGAGCGTTGATGTTGATCTTTCTGAGTACTTTAAGGAGATTCTTTATGTGGGGTTTTCTGGTTCCACTGAAGGAAGCACTGAGCTTTATGAAATTGTGAATTGGAGCTTTGAGTTATTTGAGTTTCTTGTTCCTCAAAAACCAAGCTTGGTTAATCATCATAATGTTTCTGGTAGTGGTAGCACTGTGAGTGTAGCAGTTAAGGATGTTCCTGCTTCCAAGAACTCAACAAAGAACCGTAAGAGATTTGTGATTGGTGTTGGTGTTGCCATTGCTGGTCCAGCTTTTTTCTGTGTGGTGCTTTTGGTTTTGGGGTATGTTTCTTTTCGGAAATGGAATGGTGTGAGGAAGCAGAAGAAGAGTTTCAGAACTGGGTTTGTCGGGTGTCCTAAGGAGTTTGATTACAAGGAGTTGAAATTGGCCACTAGAGGTTTTCATGTTTCAAGGATCATTGGGAATGGATCTTTTGGGACAGTGTATAAGGCCTTGTTTGTTTCTTCAGGAACCATTGCTGCAGTGAAAAGATCAAGGCATTCCCATGAGGGGAAAACAGAATTCCTCTCTGAGTTGTCTATTATAGCTGGTTTGAGGCACAAGAATTTGGTTCAGCTTCAAGGTTGGTGTGTTGAGAAGGGTGAATTGCTTCTTGTGTACGAGTTTATGCCCAATGGGAGCTTGGATAAGATACTTTACCAAGAATCTGAATGTAGCAATTTTTTGTTGAGTTGGTTTCATAGACTCAACATTGCTATTGGGTTAGCTTCTGTTCTGAGTTACCTACACCAAGAATGTGATAAAAGAGTGATTCATAGAGACATCAAGACTGGGAACATATTGCTAGATGGGAACTTCAACCCCAGGTTGGGGGATTTTGGATTGGCAAAGTTAATGGATCATGATAAGAGCCCAGTTTCAACATTAACTGCTGGAACAATGGGGTACCTTGCTCCTGAGTATCTTCAATATGGGAAAGCAAATGATAAAACTGATGTTTTCAGCTATGGAGTGGTTGTGCTTGAAGTGGCTTGTGGGAGAAGGCCAATTGAAAGAGAGGGTCAAGAGATGGTGAATTTGGTTGATTGGGTTTGGGGATTGCACTCTCAAGGGAAGATAATTGAAGCAGCTGATAAAAGGTTGAATGGGGAGTTTCAAGAAGAGGAAATGAGGAAGCTATTGCTCTTGGGATTGAGTTGTGCAAACCCAGATAGTGATCAAAGACCTTCCATGAGAAGAGTCCTACAGATTCTTAACAATGAAGCTGTGCAACCTCTTGTAGTGCCTAAAGTGAAACCAAGCCTTACATTCTCATATAGTCTGCCATTGAGTCTTGATGAGATAGTTTCAGATACTGAGGAAGAGTTCAATTCCAGCCATAATTTGTGTGAGATAAAAATTGACTGA 2004 0.4436 MPFITTTNTVTVTVTVIFFFLFMLPSTLSQNTTFNFSSFTLRNITLLGDSFLRNGVVGLTRSTTVPASSAGSFIYNNPINTTTFTTTFSFSITNTTGSSGNGFAFFLSPFNRLLGIPGSLPNSSEPNRFVAVEFDTRFNHVGLDLNTLDPVRTDDLTLQGIDLKSGKLITSWIDYNSDKKKLSAFLTYSGSSNSSKPEKPVLSVDVDLSEYFKEILYVGFSGSTEGSTELYEIVNWSFELFEFLVPQKPSLVNHHNVSGSGSTVSVAVKDVPASKNSTKNRKRFVIGVGVAIAGPAFFCVVLLVLGYVSFRKWNGVRKQKKSFRTGFVGCPKEFDYKELKLATRGFHVSRIIGNGSFGTVYKALFVSSGTIAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLQGWCVEKGELLLVYEFMPNGSLDKILYQESECSNFLLSWFHRLNIAIGLASVLSYLHQECDKRVIHRDIKTGNILLDGNFNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKANDKTDVFSYGVVVLEVACGRRPIEREGQEMVNLVDWVWGLHSQGKIIEAADKRLNGEFQEEEMRKLLLLGLSCANPDSDQRPSMRRVLQILNNEAVQPLVVPKVKPSLTFSYSLPLSLDEIVSDTEEEFNSSHNLCEIKID 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3478g00001 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Gabi3478g00001 667 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Gabi3478g00001 667 SUPERFAMILY Protein kinase-like (PK-like) 330 635 IPR011009 -
Gabi3478g00001 667 Gene3D Phosphorylase Kinase; domain 1 309 421 - -
Gabi3478g00001 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 245 IPR013320 -
Gabi3478g00001 667 PANTHER - 47 628 - -
Gabi3478g00001 667 Gene3D Transferase(Phosphotransferase) domain 1 422 625 - -
Gabi3478g00001 667 FunFam L-type lectin-domain containing receptor kinase VIII.1 309 421 - -
Gabi3478g00001 667 CDD STKc_IRAK 352 619 - -
Gabi3478g00001 667 Gene3D - 29 240 - -
Gabi3478g00001 667 ProSiteProfiles Protein kinase domain profile. 346 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3478g00001 667 FunFam L-type lectin-domain containing receptor kinase VIII.1 422 636 - -
Gabi3478g00001 667 Pfam Legume lectin domain 32 239 IPR001220 GO:0030246
Gabi3478g00001 667 CDD lectin_legume_LecRK_Arcelin_ConA 32 241 IPR001220 GO:0030246
Gabi3478g00001 667 ProSitePatterns Legume lectins beta-chain signature. 130 136 IPR019825 -
Gabi3478g00001 667 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3478g00001 667 Pfam Protein kinase domain 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3478g00001 Gabi-Chr3478 36171 38174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3478g00001 29 653 Receptor kinase-like Gene Family AT5G55830 60.671 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi3478g00001 Pkinase 6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3478g00001 - - qsa:O6P43_021312 835.484