Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3474g00003 ATGCCGTTCTACCAGTTCAGCTTCGGTAGTCACAAGGATTTCTTGGCGCAAGACACCCGGAAGACCGCTCTGACCGAGTTCATCGGCACATTCATCTTCGTCTTCGCCGGCTCCGGCTCCGGCATCGCCATCAACAAGCTAACCGGAGGCGCCGCCGCCACCCCCACCGTCCTCATCGCCGCCGCCATCGCCCACGCGTTCGCCTACGTCGTTGCCGTCTCCGTCGGCACAAACTTCAACGGCGGCCAAGTCAACCCCGCCGTCACCTTCAGCCTCTTCATCTGTGGCTACATAAACTTCATCCGCGCCGTCTTCTTCTGGCTCGCTCAGCTCGCCGGCTCCCTCTGCGCCTGCTTACTCCTCAAGTTCGCCACCGGCGGAAAGAGTGTTCTGGCTTATGGGCTTTCGGATGGAATGGGAGCGTGGAACGCGGTGGTGTTAGAGATGGCGATGACGTTCGGATTGGTGTACACGGTGTACGCTACTTCTCGTGATCCCAAGGTGAGTACTAATTTAGAAACGATTGCACCGATTTCGATCGGGTTCATGGTTGGAGCGAATATTTTGGTGGGTGGGGCTTTTGATGGGGGATCCATGAACCCGGCTTTATCATTTGGGGCTGCTGTAGTGACCTGGAGCTGGAACAATCATTGGGTCTATTGGGTTGGGCCTCTTTTTGGTGGTACACTTGCTGGGCTTATTTACGAGCTGGCCTTTGTTGTCCCAACCTATCCACGGAGGGACCCATTATATTCATGA 759 0.5613 MPFYQFSFGSHKDFLAQDTRKTALTEFIGTFIFVFAGSGSGIAINKLTGGAAATPTVLIAAAIAHAFAYVVAVSVGTNFNGGQVNPAVTFSLFICGYINFIRAVFFWLAQLAGSLCACLLLKFATGGKSVLAYGLSDGMGAWNAVVLEMAMTFGLVYTVYATSRDPKVSTNLETIAPISIGFMVGANILVGGAFDGGSMNPALSFGAAVVTWSWNNHWVYWVGPLFGGTLAGLIYELAFVVPTYPRRDPLYS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3474g00003 252 FunFam Probable aquaporin TIP1-1 4 249 - -
Gabi3474g00003 252 SUPERFAMILY Aquaporin-like 19 242 IPR023271 -
Gabi3474g00003 252 PANTHER AQUAPORIN-8 7 241 IPR034294 -
Gabi3474g00003 252 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3474g00003 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3474g00003 252 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3474g00003 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3474g00003 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3474g00003 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3474g00003 252 Pfam Major intrinsic protein 20 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3474g00003 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gabi3474g00003 252 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3474g00003 Gabi-Chr3474 86847 87697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3474g00003 1 246 Major Intrinsic Protein MIP AT2G36830 60.976 7.22e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3474g00003 K09873 - sly:101267949 311.612