Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3474g00002 ATGCAAGTCCAGGAGGAACTCGTGGTTTCCAAGGATCAAACGCAGATAATCAAAGGCAAAGGCAAGCGCGCCAAGCGTCAAAGGTTACCAACCCCACTACGGGTAGCCATGCCTTCAACTTCTTGTAGTGACAATTGTGAAGGACTTGACATGGTTACAACAACAACAACAACCTCGCCCAACACCACAATTGAGTTGAGGGACAGAACCGAAGAAGAAGACATGGCCAATTGTCTCATTCTCTTGGCTCAAGGTCATGATAACAAGCATAACAAGTTAGGCCAATACCTTTACCAATGCAAGACTTGTAACCGATGCTTCCCTTCATTCCAAGCTCTTGGTGGACATAGAACAAGCCACAAGAAACCTAAGACAAACGGTACTAATCATTATGATCCCATCACAAGTACCATACTTTCCTTGCAAATACCAAATAGGGCTATGTATAACAACAACACTATTACTACTACTACTACTACCACAACTGCAACAAAATCCAAAATTCACGAGTGTTCTATTTGTGGGGTTGAGTTCTCTTCTGGGCAAGCCTTGGGGGGCCATATGAGACGGCACAGAAGTTTTGTGAATACATCCACAACAACTTCTATGAGCGGTGGTAATATTGGTGGTGGTGGTAGCTCTGATTCCCAAGAAGCTAAGAAACCCAGAAATGTTTTGAAGTTGGACTTGAATCTTCCAGCACCAGAGGATGCTGATCACAGAGAATCCAAGTTTACGTTTCTGCCCAGAGAAAATGTTATTGTCTTCTCTACATCTTCTTTGGTGGATTGCCATTACTAA 801 0.4332 MQVQEELVVSKDQTQIIKGKGKRAKRQRLPTPLRVAMPSTSCSDNCEGLDMVTTTTTTSPNTTIELRDRTEEEDMANCLILLAQGHDNKHNKLGQYLYQCKTCNRCFPSFQALGGHRTSHKKPKTNGTNHYDPITSTILSLQIPNRAMYNNNTITTTTTTTTATKSKIHECSICGVEFSSGQALGGHMRRHRSFVNTSTTTSMSGGNIGGGGSSDSQEAKKPRNVLKLDLNLPAPEDADHRESKFTFLPRENVIVFSTSSLVDCHY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3474g00002 266 MobiDBLite consensus disorder prediction 114 133 - -
Gabi3474g00002 266 SMART c2h2final6 169 191 IPR013087 -
Gabi3474g00002 266 SMART c2h2final6 98 120 IPR013087 -
Gabi3474g00002 266 MobiDBLite consensus disorder prediction 197 219 - -
Gabi3474g00002 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 191 IPR013087 -
Gabi3474g00002 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Gabi3474g00002 266 PANTHER ZINC FINGER PROTEIN ZAT5 28 247 - -
Gabi3474g00002 266 MobiDBLite consensus disorder prediction 197 220 - -
Gabi3474g00002 266 Gene3D Classic Zinc Finger 97 191 - -
Gabi3474g00002 266 SUPERFAMILY beta-beta-alpha zinc fingers 97 191 IPR036236 -
Gabi3474g00002 266 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Gabi3474g00002 266 Pfam C2H2-type zinc finger 169 193 - -
Gabi3474g00002 266 Pfam C2H2-type zinc finger 98 123 - -
Gabi3474g00002 266 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3474g00002 Gabi-Chr3474 66552 67352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3474g00002 20 266 C2H2 Transcription Factor Family AT5G03510 38.989 2.78e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3474g00002 zf-C2H2_6 3.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3474g00002 - - gmx:100785596 292.352