LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3474g00001	ATGGCGGCAGAGCTAATCGCTGGGGTATTTCTTCAGTCTTTCTTTAAAGTTACTTTCGACAGGTTGGCATCCATTGCTTTCCTCCGTGGAAGCAAACTTAAGGTTGTGCTGAAAAAACTCGAGCTTACAGTTAATTCTATCAACCATGTGGTTGATGATGCAGAGAAAAAAATCGCTGGAAATTTGAACTATTCATGTAACATTCTGGTTGATAATTTGATGAACAATGACAATTTCATCACTGTTACGTGGATTGTCTTATATTGGATGCAAGCATGTACTATGGAATGCCTTTATTGGAAGTTGAGATTTGAGGTCATTTTAAAAGAGTATACTGTCGTTATTCAAGAATTGCAGTTCCAGAATTTGCAGCTCCCATCACGTGAAGACTGCAATTTGACCGACACAACAGGATGCAAGATGGCAGCGTGCAACTGCAAGGAAGGTGAAGTTATTTGGAATCCCCCAGAAAGATTGCTAACTTCCTCTTTGGTGGATCCATCAAGCAGCACATATGGTAGAGATGTAGAAAAAGAGGAAATAATCGAATTTTTACTTTCAGACAATGTCACTGACAATGTAAAGAACAAGCAGGTACCTATAATTAGCACATGGCTTCGCCACTGCATAGTGGGTTTCGGTGGGATGGGAAAGACAACCCTTGCTCAGCTTGTGTACCATGACCAAAGGATGAAGGAGCAGTTTGAATCTAGTAGAGCATGGGTCTGTGTTTCGGATTATTCTAATGTTGTTGGACTTACAAAAGCAATTCTTGAGTCGTTTAAGTTTTCAACAGATGCTGAAGACTTTATACCACTCCAAGATGAATTGGCGGAGAGAGTAATTGGCAAGAAATATTTGCTTGTTCTAGATGATGTCTGGAATCTTGATCGGGAAAGTTGGGAGGCCCTACATGCTGCCCTTAACTGTGGATCTCCTGGAAGTAGAATTCTTGTCACTACACGTGATAACAAGGTAGCATCAGTCATGAATTCCCAACTACTTTGTTTAAAGGAATTGAAGGAAAATGATTGCTGGAGTTTATTTGTGAGACTTGCTTTAGGGGACAAGGATGTAAGTGAATATCGAAATCTTGAATCAATTGGCAGGAAAATTATAGAGAAGTGTGGAGGGTTGCCTTTGGCTATAAACGTATTGGGAAATCTCTTGGGAGGAAATCTGTACGAGGCTTCTTGTCACCTTGTATGGAATAAGATACTGAAGTCTGATAGGTGGATTTTATCGGATAAAAATAACATTAATCCGGTGAGATTGAGTTACCATGTCCTTCCGTCCAATCTGAAGCGTTGTTTTGCTTATTGTTCCTTGTTTCCCAAAGGTTACCGGTTCATAAAGGAAGAATTAATCAGGCTTTGGATGGCAGAAGGTTTGCTGAAATGCAACCCAACAGATGAAAGCGAAGAAGAGTTGGATTCAATTTCATTTTTCCAACCAGCAGGAGGTAGAGATGATTGCTTCGTCATGCATGATCTTGTCAATGATTTAGCAAAATCGGTGTCAGGAGAATTTTGTTTACGAATAGATGGTGATAGGGTGCCAGATATCCCTGAAAAGACACGTCACATTTGGTGGTGCTCTGATGAAGTAAAAGATGTTGATAAAATATTAGAGCAAATTTACAAATGTAAGGGGTTACACAGAGATATAAAAATAAGGGAAGATGATGACCCAGGCTTCAAGATATGCAACAATGTTATGTTTTCAACACTAAAATATTTGCGGGTGTTATCATTCACATATTGTTATTTCTTGGAGAAGCTAGCTGATGAGATAGGCAATTTGCAAAGAAGGAAGGTGTTGAGGCAGGGCATTTTTCAACTTGGGACAGTCGAATATGTAGAGATCATTGGTAGAGAGTTTTACGGTGATAATTTGTCAACTGATCCATTCAGGTCTCTTGAAATCTTGGAATTTCGAGATATGCTCAGATGGAAGGAATGGTTATGTTTGGAAGATGGTGAAGGTTTCCCATCTCTTAAAGAGCTTTACATATTCGACTGTCCCAAGTTGAAAAATGCCCTGCCTCAACACCTTCCTTCTTTGCAAATATTAGCTATTCATGAATGCCACGAGTTGGAGGCTTCACTTCCCGAGGCTCCTAATATTGTTAAGTTACGACTAAAGGGATGTGAAAACATTTCAGTCAATATATTGCCATCCAACTTGAAAGAAGTGGACATTAGTGGAACTCGATAATTTGAGTCCTCCTTGAAGCAAATTCTATTGAACAATACCTCTCTTGAAGTGTTGGAGGTTGGTGAACTTCCAAATGTCTCCTCTTTGAAATTGAGCTACATTCCTCTTCCCACTCTACACTTTACAAAGGGGTACTTTTCCTCCTCGTGGCCTTTCACACTAGACATGTTCACCAATCTTCATTCTCTCAAATTGTATGATTGTCCAGAGCTGGAATCGTTTCCTGAGGGAGGTTTTCCTTCCAGTCTGAGCAGCCTCGCAATAAGGAGATGCCCCAAACTGATTGCTTCGAGAGAGGAGTGGAGAGAGGAGTGGGGTTTGTCCAAACTTCATTCTCTGAAACAATTCATAGTTAGTGATGACTTTGAAAACGTGGAGTCCTTCCCGGAGGAGAATCTGCTGCCACCCAATATTGACCATCTCTGTATATGGAGTTGTTCAGAGCTAAGAATAATTAACTACAGAGGATTTTCCCATCTCAAATCTCTCAAAACCTTATATATTTGTTTTTGCCCTTGTGTTGAGTACTTGCCAGAGGAGGGTCTACCCAACTCCCTTTCTACTTTAGGGATTGTTGGTTGTCCATTACTTAAGCAGCGCTTTCAGAAGGAGGGAGGAGAGCATTGGCATAAAATTCGTCACATCCCTTCTGTGAAATTTTTCTAG	2883	0.4034	MAAELIAGVFLQSFFKVTFDRLASIAFLRGSKLKVVLKKLELTVNSINHVVDDAEKKIAGNLNYSCNILVDNLMNNDNFITVTWIVLYWMQACTMECLYWKLRFEVILKEYTVVIQELQFQNLQLPSREDCNLTDTTGCKMAACNCKEGEVIWNPPERLLTSSLVDPSSSTYGRDVEKEEIIEFLLSDNVTDNVKNKQVPIISTWLRHCIVGFGGMGKTTLAQLVYHDQRMKEQFESSRAWVCVSDYSNVVGLTKAILESFKFSTDAEDFIPLQDELAERVIGKKYLLVLDDVWNLDRESWEALHAALNCGSPGSRILVTTRDNKVASVMNSQLLCLKELKENDCWSLFVRLALGDKDVSEYRNLESIGRKIIEKCGGLPLAINVLGNLLGGNLYEASCHLVWNKILKSDRWILSDKNNINPVRLSYHVLPSNLKRCFAYCSLFPKGYRFIKEELIRLWMAEGLLKCNPTDESEEELGXSISFFQPAGGRDDCFVMHDLVNDLAKSVSGEFCLRIDGDRVPDIPEKTRHIWWCSDEVKDVDKILEQIYKCKGLHSXDIKIREDDDPGFKICNNVMFSTLKYLRVLSFTYCYFLEKLADEIGNLQRRKVLRQGIFQLGTVEYVEIIGREFYGDNLSTDPFRSLEILEFRDMLRWKEWLCLEDGEGFPSLKELYIFDCPKLKNALPQHLPSLQILAIHECHELEASLPEAPNIVKLRLKGCENISVNILPSNLKEVDISGTRXFESSLKQILLNNTSLEVLEVGELPNVSSLKLSYIPLPTLHFTKGYFSSSWPFTLDMFTNLHSLKLYDCPELESFPEGGFPSSLSSLAIRRCPKLIASREEWREEWGLSKLHSLKQFIVSDDFENVESFPEENLLPPNIDHLCIWSCSELRIINYRGFSHLKSLKTLYICFCPCVEYLPEEGLPNSLSTLGIVGCPLLKQRFQKEGGEHWHKIRHIPSVKFF	962

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3474g00001	962	SUPERFAMILY	L domain-like	488	953	-	-
	Gabi3474g00001	962	PANTHER	DISEASE RESISTANCE PROTEIN RP	37	887	IPR044974	GO:0006952
	Gabi3474g00001	962	Gene3D	Ribonuclease Inhibitor	728	959	IPR032675	-
	Gabi3474g00001	962	Gene3D	-	339	426	IPR042197	-
	Gabi3474g00001	962	Coils	Coil	37	57	-	-
	Gabi3474g00001	962	Gene3D	Ribonuclease Inhibitor	568	710	IPR032675	-
	Gabi3474g00001	962	PRINTS	Disease resistance protein signature	685	701	-	-
	Gabi3474g00001	962	PRINTS	Disease resistance protein signature	280	294	-	-
	Gabi3474g00001	962	PRINTS	Disease resistance protein signature	207	222	-	-
	Gabi3474g00001	962	PRINTS	Disease resistance protein signature	376	390	-	-
	Gabi3474g00001	962	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	160	441	IPR027417	-
	Gabi3474g00001	962	Gene3D	-	427	507	IPR036388	-
	Gabi3474g00001	962	Gene3D	-	155	335	IPR027417	-
	Gabi3474g00001	962	Pfam	NB-ARC domain	210	391	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3474g00001	Gabi-Chr3474	6954	37449	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3474g00001	210	447	WRKY Transcription Factor Family	AT5G45050	27.572	8.35e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3474g00001	-		-	vvo:131659620	639.417