Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3472g00001 ATGGAGGTTCCAGAGATGAAAGGCAAGACTGAAAGTCATACGACATCAGCAGTGGCCTTTGTGGAAGGGGGGATTCAAGAAGCCTTTGATGATGCTTGCAGTATATGCCTTGAGGATTTTTGCGAGAGGGATCCTGCAACTGTCACCAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATGCTACCAGTCAAGAATTGCTTGATGCAGTAGTGCTGGAGAGGAGCTTGAGGGTTACCCCATCAAGAAATGCTGTGATTTTTCATTATCCTGCCCTTGGTGATTTTGAATTCCAGCATTTACCCATTGGTGTAAATGATGCTGATATTGAAGAGCGAATACTTCAACGTTTAGCTGCTGCTACAGCACTGAGGAGAGCACAACACCTAGGTCAAAGGGAAGATCGAAGAACTAGGCCATTTGCTCATGGCCGTCCACGTGTATTAGTATTCTCAACTCAGCCTAGTGCACCTCCATCAGGTCCTGATTCAGCTGCCGGAGGGGGAAATGAACCAGCCGCAATTCCTGTAGGAAGTCCGTCTACCCCACTTACATATGATGGAGATGAAGCATCACCATCCCAGCAGATCCCACATTTTCGAGCTCAGGGCTCTTCTCTAACTCCTGGTTCTTCTGTTATGGCAACAAATCTTCAAGGAATTTACTCTAATGATAGAAGGTCTACTGCTCATTCTACTACTGCAAACCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTTTCTGATTCACTGCGGTCCAGATTTAATGCGGTGTCCCTGAGGTACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGCTCTCTGGTAATTCTTCTGTGTCAGAAATTGGTTCAGAAGTTAGGAGAGAATTGAATGCGAAAATTGCTAGTGTTTCCCGATTGATGGAGCGCCTTGAAACCCGAGAAAATAATCAGGCTGCTGGTACTTCTTTGTCCATTGCAGAGACAAGCAACCAGAACAATGAGGCACCTCGTGGAGAGAACTCTTTGCATGACAACAATACTCCAGCTACTTGTTCTGCTAGCTCAGATTCAAATTGA 1137 0.4582 MEVPEMKGKTESHTTSAVAFVEGGIQEAFDDACSICLEDFCERDPATVTNCKHEFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLDAVVLERSLRVTPSRNAVIFHYPALGDFEFQHLPIGVNDADIEERILQRLAAATALRRAQHLGQREDRRTRPFAHGRPRVLVFSTQPSAPPSGPDSAAGGGNEPAAIPVGSPSTPLTYDGDEASPSQQIPHFRAQGSSLTPGSSVMATNLQGIYSNDRRSTAHSTTANQDRAGPSEFQSFSDSLRSRFNAVSLRYKESISKGTRGWKERLLSGNSSVSEIGSEVRRELNAKIASVSRLMERLETRENNQAAGTSLSIAETSNQNNEAPRGENSLHDNNTPATCSASSDSN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3472g00001 378 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 11 83 - -
Gabi3472g00001 378 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Gabi3472g00001 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 83 IPR013083 -
Gabi3472g00001 378 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 81 - -
Gabi3472g00001 378 SUPERFAMILY RING/U-box 30 80 - -
Gabi3472g00001 378 MobiDBLite consensus disorder prediction 205 268 - -
Gabi3472g00001 378 Pfam Ring finger domain 32 73 IPR001841 -
Gabi3472g00001 378 SMART ring_2 33 73 IPR001841 -
Gabi3472g00001 378 MobiDBLite consensus disorder prediction 147 268 - -
Gabi3472g00001 378 MobiDBLite consensus disorder prediction 148 162 - -
Gabi3472g00001 378 MobiDBLite consensus disorder prediction 334 378 - -
Gabi3472g00001 378 SMART FANCL_C_2 29 82 - -
Gabi3472g00001 378 Coils Coil 313 333 - -
Gabi3472g00001 378 MobiDBLite consensus disorder prediction 333 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3472g00001 Gabi-Chr3472 13759 17971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3472g00001 30 81 C3H Transcription Factor Family AT4G00335 46.154 3.89e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3472g00001 K19043 - gmx:100803582 571.622