Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3469g00005 ATGTCTCGCCGCCGTGATCAACAGTCTCCGGCGCATTCGCAACCAAATCCTGCTGCAGCTTCAGGAAGAGGCCGTGGTCGTGGACGGCGTGGAGGTACTAACGTTGCTGATTCTCCAAATGCACCTCCGCCATCGTCTGCTCCTCCTCCTTCACATGCGGTTGCTGATTCTCCAAATGCACCTCCGCCATCGTCTGCTGCTCCTCCTGCACATGCGGCGTCGTCGCCTGCTCCTACTCTTCCAGCGCCGGTGATCCGTTCTCCTACCGTTGCTGCCTCAACTTCTTCGCAGCAGTCATCTTCGTCCCCGGTTCTGATGGAAGCTATGAGTGCTGATTTTGAGCAGCAGCTAACCTTGAAGTCGCCAACACCGCCTTCCTCCTCGAAGGCTATCAGGTTCCCTGACCGGCCGGGTCTTGGTAAATTGGGGAAGAAAATCAAAGTTCGCGCTAATCATTTTCAAGTCCAAGTTGCTGAAGGAGATCTGGCACATTATGATGTTGCCATCACCCCTGAGCTTACTTCAAAAAAGCTCTGTAGAGCTGTGATGAGTCAGTTAATCCAAATGCATGGAGAAACACTCTTGGGTAGGCGCATTCCTGCCTACGACGGTGGTAAGAGTCTTTTTACTGCAGGCCTATTGCCTTTCTCATCAAAGGAATTTGTGGTGAAGTTGGTTGGCGATGATGAAGCTGCCTCGTCCTCTAGTTCTTCTAGGAAAAGGCGAGAACGTGAATTTAAGGTCACAATCCGATATGCTGCTAAGACTGACGTTCACCATCTTCATCAGTTTCTTAGGCGCCTACAACTGGACTGTCCACAAGAAACCATACAAGCCCTTGATGTTGTTCTACGGGCAACACCATCTGAGAAGTATAATGTTGTAGGGAGGTCATTTTTCTCACCCGATTTGGGGAAAACTGGTTCACTTGGTGGTGGTCTAGAATATTGGAGAGGATATTATCAGAGTCTTCGCCCAACTCAAATGGGACTTTCTCTCAATATTGATGTGTCAGCCAGGGCATTTTATGAACCAGTTCATGTGACTGAGTTTATTGCAAAACATTTCAATTTCAATTTTTCCAGGCCTATGTCCGATCAAGATCGACTTAAGGTTAAGAAAGCTTTGAGAGGAGTCAAGGTAATAGTTACTCATGGTAAGAGTATGAGAAGTTACAAAGTAACTGGAGTCACAAAAGAACCGCTCCGAGAGTTAAAGTTTACTCTCGATGACCAAAAAACAAAAAAATCGGTTGTCCAATACTTCCGTGAGCAATACAATATTAACTGTCAGTATTTGGACCATCCTGCTCTTCAGGCTGGAAGTGACACAAAACCTGTTTATTTGCCTATGGAGCTTTGTCAGATTGCAGCTGGACAACGATACACTAGGAGATTAAACGAGGGTCAAGTATCTAATCTTTTAAAGGCAACCTGTCAGCGTCCTCTTGATAGGGAAAACAATATCAAAATGATTGTGGGCCAGAACGATTTGAACTCAGACAAATTTGTGCGTGAGTTTGGAATTAAAGTAAGGGAGGAACCTACTACGGTTGATGCCCGCGTTTTGCCTCCTCCAATGCTTAAATATCATGAAACAGGCAGAGAATCAAGTGTTGACCCAAGGATGGGCCAGTGGAATATGATTAATAAGAAAATGGTCAATGGTGGTAATGTGCCATACTGGAGCTGCCTCAACTTTTCATCAAGACTTAACAGAGATTTGCCATTTCAATTTTGTGATGAATTGGTCAATATGTGTACCAGCAAAGGAATGTTTTTCAATCGAGAGCCCATAATACCTATCACTTCTGCTCATCCTAGTCAAATAGATAGAGCTCTGGTGGATTTTCATAAGCAGTGTATGAAAAAACTTGCAAGCATGAAGGATGGAAAACTCCAATTGTTGATAATAGTTTTGCCTGATATCAAAGGGTCTTATGGAAAAATAAAGCGTATATGCGAAACAGAATTGGGGATAGTCTCGCAATGTTGTCAGCCTCATCAAGTTGCGAAGTTGAATAAGCAGTATCTTGAAAATTTGGCCCTCAAGATAAATGTTAAGGTTGGAGGTCGAAACACTGTGTTAAATGATGCGATCCAGAGAAGAATCCCTAATGTGTCTGATAAGCCAACATTAATCCTGGGTGCGGATGTAACCCATCCACAACCAGGGGAAGACTCGAGTCCTTCTATTGCTGCAGTAGTGGCATCCATGGATTGGCCTGAGGTCACAAAGTACAGAGGAATAGTTTCTGCTCAGGTTCACCGGGAAGAAATTATTCAGGATCTTTATAAATCATTTCAAGATCCTAAGAAGGGATTGGTGCATGGTGGAATGATTAGGGAGTTACTTATTGCTTTCTACAAATCGACTAAGACTAAGCCTTACCGGATTATATTCTACAGAGATGGAGTTAGTGAGGGCCAATTTAGTCAGGTTTTGCTTTATGAGATGGACGCAATACGGAAGGCTTGTGCCTCATTAGAGGAGGGGTATCTACCACGAGTTACCTTTGTTGTGGTACAGAAAAGACACCACACTCGTCTCTTCCCTGCTGTTCACGGAAGTCGCGATCAGACGGATAAAAGTGGAAATATTATGCCAGGGACTGTTGTCGATACCAGCATTTGCCATCCGAGAGAATTTGATTTTTATCTTAATAGCCACGCTGGAATTCAAGGAACTAGTCGGCCCACACATTATCATGTACTGTTTGATGAAAATAACTTCAATCCGGATCAGTTGCAGACTCTGACAAATAATTTGTGTTATACGTATGCAAGGTGCACTCGATCGGTGTCAATAGTTCCTCCAGCTTATTATGCACACTTGGCGGCTTTTCGAGCTCGTTACTACATTGAAGGAGAAACATCGGAAGGCGATTCTACAGGTGGAAGTGGAACAAGGACTACTAATTTTGAGGTGACATTGCCTTCCATCAAGGATAATGTCAAGGATGTTATGTTTTTCTGCTGA 2979 0.4411 MSRRRDQQSPAHSQPNPAAASGRGRGRGRRGGTNVADSPNAPPPSSAPPPSHAVADSPNAPPPSSAAPPAHAASSPAPTLPAPVIRSPTVAASTSSQQSSSSPVLMEAMSADFEQQLTLKSPTPPSSSKAIRFPDRPGLGKLGKKIKVRANHFQVQVAEGDLAHYDVAITPELTSKKLCRAVMSQLIQMHGETLLGRRIPAYDGGKSLFTAGLLPFSSKEFVVKLVGDDEAASSSSSSRKRREREFKVTIRYAAKTDVHHLHQFLRRLQLDCPQETIQALDVVLRATPSEKYNVVGRSFFSPDLGKTGSLGGGLEYWRGYYQSLRPTQMGLSLNIDVSARAFYEPVHVTEFIAKHFNFNFSRPMSDQDRLKVKKALRGVKVIVTHGKSMRSYKVTGVTKEPLRELKFTLDDQKTKKSVVQYFREQYNINCQYLDHPALQAGSDTKPVYLPMELCQIAAGQRYTRRLNEGQVSNLLKATCQRPLDRENNIKMIVGQNDLNSDKFVREFGIKVREEPTTVDARVLPPPMLKYHETGRESSVDPRMGQWNMINKKMVNGGNVPYWSCLNFSSRLNRDLPFQFCDELVNMCTSKGMFFNREPIIPITSAHPSQIDRALVDFHKQCMKKLASMKDGKLQLLIIVLPDIKGSYGKIKRICETELGIVSQCCQPHQVAKLNKQYLENLALKINVKVGGRNTVLNDAIQRRIPNVSDKPTLILGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQVHREEIIQDLYKSFQDPKKGLVHGGMIRELLIAFYKSTKTKPYRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEEGYLPRVTFVVVQKRHHTRLFPAVHGSRDQTDKSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENNFNPDQLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSEGDSTGGSGTRTTNFEVTLPSIKDNVKDVMFFC 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3469g00005 992 SMART DUF1785_2 293 345 IPR014811 -
Gabi3469g00005 992 MobiDBLite consensus disorder prediction 1 84 - -
Gabi3469g00005 992 Pfam Mid domain of argonaute 541 619 IPR032473 -
Gabi3469g00005 992 Pfam Argonaute linker 1 domain 295 344 IPR014811 -
Gabi3469g00005 992 CDD Piwi_ago-like 502 954 IPR045246 -
Gabi3469g00005 992 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 116 956 - -
Gabi3469g00005 992 SUPERFAMILY PAZ domain 145 493 IPR036085 GO:0005515
Gabi3469g00005 992 Pfam Argonaute linker 2 domain 484 530 IPR032472 -
Gabi3469g00005 992 ProSiteProfiles PAZ domain profile. 346 458 IPR003100 GO:0005515
Gabi3469g00005 992 MobiDBLite consensus disorder prediction 41 69 - -
Gabi3469g00005 992 ProSiteProfiles Piwi domain profile. 635 955 IPR003165 GO:0003676
Gabi3469g00005 992 Pfam N-terminal domain of argonaute 144 284 IPR032474 -
Gabi3469g00005 992 SMART Piwi_a_2 635 955 IPR003165 GO:0003676
Gabi3469g00005 992 Gene3D - 703 992 IPR036397 GO:0003676
Gabi3469g00005 992 FunFam Argonaute 10 522 697 - -
Gabi3469g00005 992 Pfam Piwi domain 637 954 IPR003165 GO:0003676
Gabi3469g00005 992 SMART PAZ_2_a_3 350 483 IPR003100 GO:0005515
Gabi3469g00005 992 Gene3D paz domain 340 462 - -
Gabi3469g00005 992 SUPERFAMILY Ribonuclease H-like 622 955 IPR012337 -
Gabi3469g00005 992 Gene3D - 522 698 - -
Gabi3469g00005 992 CDD PAZ_argonaute_like 345 457 - -
Gabi3469g00005 992 FunFam protein argonaute 10-like 703 992 - -
Gabi3469g00005 992 Pfam PAZ domain 369 474 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3469g00005 Gabi-Chr3469 85210 90780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3469g00005 91 992 Eukaryotic Initiation Factors Gene Family AT1G48410 58.422 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3469g00005 K11593 - gmx:100799033 1308.89