Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3469g00002 ATGTGCAGTGGTCCAAAGAAATCAAAATCTCCTTCAGATTCGTCTTCTTCATCAGCTGTTCAAGTTTCAACTAACGTTAACAATATGAAAACTCTAACTGTTAATACTGAAGATTCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATATTGAAGGTTTTCAGCTACTTTTAGAGAAGGAAGCTTCTTCAATTAATGAAATTGGGACCTGGTATGTTCGTCAAAATGGTTCCAAACAAATTGTTCTTGAGCACAGAACTCCTTTGATGGTTGCTGCTACATATGGTAGCATCGATGTTCTGAAGTTTATACTCTCGTGTCCCGAGGCAGATGTAAATTTCTCCTGTGGGATGAATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGTTAATGCAGTTGATGCTGTGAAGCTTCTGTTATCGGCTGGTGCTGATCTTAATTGCATTGATGCTAATGGAAATCGTCCTGTTGATGTTATTACTGTTCCTCCCAAGTTGCAAGGCATGAAAGCTAGTCTTGAGGAACTTCTTTCGGAGGGTGCTTCTGATGAATCTGTTGGTGACTTCTCTGTACCGGTTTCGGTTAGTTCTTCCAGTCCTGGTTCCCCTGCCCATTTATCTTCACTTGAAAATGGGATTCCATACTCTCCTTCGGCCTCACCACCTTCTCCTGTGGCTTCAAAGTTTGCTGATGCAGCTATTAACTCTCTATCAGAGAAGAAAGAATACCCAATTGATCCATCACTTCCTGACATTAAAAACAGCATATACGCAACAGATGAATTTCGTATGTTTTCATTCAAGGTCCGTCCTTGTTCCCGTGCATATTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCACTACAGTTGTGTGCCATGCCCTGATTTTCGGAAAGGGGCTTGTAGACGCGGAGATATGTGTGAATATGCTCACGGAGTGTTTGAGTGCTGGCTACACCCAGCTCAGTATCGAACACGCCTCTGCAAAGATGGCACTAGCTGCAATAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAACTGCGTCCACTGTATGTGTCTACTGGATCTGCTGTCCCTTCGCCACGTTCTTCTGCCTCTGCTCATGTCATGGACATGGCTGCTGCAATGAGCCTTTTTCCTGGTTCACCTTCCTCAGTGTCTTCCATGTCTCCATCCCACTTTGCCCAGCCGATGTCTCCATCCGCCAATGGCATCTCACTCTCATCTGGTGCTTGGGCCCAGGCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCCTCAATCTAGTCGCTTGAGGTCTTCTCTCAGTGCTCGTGACATTCCACCTGAAGACTTGAATATGTTGCCTGATTTTGATGGCCAACAGCAGCTTTTGAATGACCTGAGCTGTTTCTTACAGCCTCGTCCTGGTGCTGTTTCAGTGGGTCGATCTTGTAGGTCTAAGACACTAACACCATCAAATCTGGAAGAGCTCTTTTCTGCTGAGATTTCTTCATCTCCCCGGTATTCTGAGCCAGCAGGGGGTTCTGTTTTTTCCCCTACACACAAATCAGCTGTTATGAATCAGTTTCAACAGCTTCAAAGTATGTTATCACCTATAAATACCAATATGCTGTCTCCCAAGAATGTTGAGCATCCTCTTTTACAGGCTTCATTTGGGGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTGTTGAACCAATCTCTCCAATGAGCTCTCGTATATCTGCATTTGCCCAGCGTGAGAAACAGCAGCAACAACTGCGGAGTCTTAGTTCAAGGGATCTTGGTGTCAACAATCCCGCCTCATTTGTTGGCTCCCCTGCAAACCCTTGGTCTAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCAGTCAATGGAGCTGAGCTAGGTCAAAAAATGCGAAGAACCTCCTCATTTGAGCTTAAAAACAATGAGGAAGAGCCTGATCTATCCTGGGTCCAATCCCTGGTGAAGGAGTCCCCACCCGAGGCGATGAAAGAGAAGTTTGCATCTTCTGGCCCTATTGCATCTGCTGATGGATTGAATTCCAATTCAGAAGTTGAATCTGTTGATCATTCTGTTTTAGGAGCTTGGCTCGAGCAAATGCAACTGGACCAGCTTGTAGTCTAA 2196 0.4517 MCSGPKKSKSPSDSSSSSAVQVSTNVNNMKTLTVNTEDSFSSLLELASNNDIEGFQLLLEKEASSINEIGTWYVRQNGSKQIVLEHRTPLMVAATYGSIDVLKFILSCPEADVNFSCGMNKSTALHCAASGGSVNAVDAVKLLLSAGADLNCIDANGNRPVDVITVPPKLQGMKASLEELLSEGASDESVGDFSVPVSVSSSSPGSPAHLSSLENGIPYSPSASPPSPVASKFADAAINSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAHVMDMAAAMSLFPGSPSSVSSMSPSHFAQPMSPSANGISLSSGAWAQANVPALHLPGSNPQSSRLRSSLSARDIPPEDLNMLPDFDGQQQLLNDLSCFLQPRPGAVSVGRSCRSKTLTPSNLEELFSAEISSSPRYSEPAGGSVFSPTHKSAVMNQFQQLQSMLSPINTNMLSPKNVEHPLLQASFGVSSPGRMSPRSVEPISPMSSRISAFAQREKQQQQLRSLSSRDLGVNNPASFVGSPANPWSKWGSPNGKVDWSVNGAELGQKMRRTSSFELKNNEEEPDLSWVQSLVKESPPEAMKEKFASSGPIASADGLNSNSEVESVDHSVLGAWLEQMQLDQLVV 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3469g00002 731 MobiDBLite consensus disorder prediction 204 224 - -
Gabi3469g00002 731 Pfam Ankyrin repeats (3 copies) 47 153 IPR002110 GO:0005515
Gabi3469g00002 731 PANTHER UNKEMPT FAMILY MEMBER 45 682 IPR045234 -
Gabi3469g00002 731 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 310 330 IPR000571 GO:0046872
Gabi3469g00002 731 ProSiteProfiles Ankyrin repeat region circular profile. 120 154 - -
Gabi3469g00002 731 SMART c3hfinal6 340 363 IPR000571 GO:0046872
Gabi3469g00002 731 SMART c3hfinal6 305 331 IPR000571 GO:0046872
Gabi3469g00002 731 Gene3D - 16 215 IPR036770 -
Gabi3469g00002 731 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3469g00002 731 ProSiteProfiles Ankyrin repeat profile. 120 155 IPR002110 GO:0005515
Gabi3469g00002 731 MobiDBLite consensus disorder prediction 204 220 - -
Gabi3469g00002 731 FunFam Zinc finger CCCH domain-containing protein 66 263 331 - -
Gabi3469g00002 731 SUPERFAMILY Ankyrin repeat 37 163 IPR036770 -
Gabi3469g00002 731 Gene3D - 305 368 - -
Gabi3469g00002 731 MobiDBLite consensus disorder prediction 685 707 - -
Gabi3469g00002 731 ProSiteProfiles Zinc finger C3H1-type profile. 310 332 IPR000571 GO:0046872
Gabi3469g00002 731 SMART ANK_2a 120 152 IPR002110 GO:0005515
Gabi3469g00002 731 SMART ANK_2a 38 68 IPR002110 GO:0005515
Gabi3469g00002 731 SMART ANK_2a 85 115 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3469g00002 Gabi-Chr3469 13569 17616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3469g00002 37 728 C2H2 Transcription Factor Family AT5G12850 55.994 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi3469g00002 Ank_2 1.3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3469g00002 - - gmx:100791328 1158.67