Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3467g00003 ATGGAGGATTTTTGGAGCATCATTTGTGGGGATTCTGGATGTTCTGTTACTGGAGGAAAGCCTTTCTGTTATGATTTCAAGCTTTTGAAAGATCCTTCCACTTGCATCAACCATTTGTTGATCATTGGCTTTGATGTGTCACTGCTGATCATGCTGTCATTCACTATGATCCAGAAATCTTCTTCGAGACCATTTTGGGATCTAATCAAGTTGGGAAGATATTCAAACTTGCAACTAGTTTCAGCCATAACCAGTGGCTCTCTTGGGTTGCTGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAGAAGTTAAGGGAAATGCACACTGCCTTTCCTCTTAATTGGTGGTTGCTAGAATTCTTTCAAGGATTCACATGGTTGTTAGTAGGTTTAACTGTAAGCCTTCAGCTGAAACAACTTCCAAGAGCATGGTTGTGGCTGTTTTCTATTCTTATATTCTTTGTTTCTGGTATTCTCTGTGCTTTATCCATGTCTTATGCCATTAGCAGCAGAGAATTGTCCCTCAAGGAAGCTTTAGATGTTCTATCTTTTCCGGGAGCAATTTTACTGCTCTTATGCACACATAAAGTACGTAAGTGTGAAGACAATGATAGAGAAATTGATGAAAGCCTTTATGCTCCTTTGAATGGCCAGTTGAATGAAGTTGATCCTATTAACTATGTAACCCCATTTGCCAAAGCTGGATTCTTCAGTAAGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTGAGGATGAGGATATCCCAAAGTTGCGGGATTCAGATAGAGCAGAAAGTTGCTATTTGATGTTTGTAGAACGATTGAACAGAAAGAAACAGAAAGAACCACCATCACAGTCGTTGGTTTTGTGGACAATAGTTTTGTGCCACTGGAGGGAGATTTTGATATCAGGATTCTTTGCATTGCTCAAAGTAATAACTCAGTCTTCTGGTCCTGTACTTTTGAATTCCTTTATATTGGTTGCTGAGGGTAATGAAAGATTCAAATATGAAGGTTATGTATTGGCTATATCACTTTTCTTTATAAAGATCATAGAATCCTTATCACAAAGGCAGTGGTATTTCCGCACTAGACTTGTTGGGATGAAAGTCAGGTCACAGCTTACAGCCGCCATTTATAAAAAACAATTGAGGTTATCCAATGCTGCTAGATTGACTCACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACCAGACATGGACAACAAGCTTTCAACTATGTATTGCATTAGTAATTCTTTTCCGTGCTGTTGGGTTGGCAACAATTGCCTCAATGGTGGTCATAGTTCTCACTGTTCTTTGCAATGCTCCACTAGCAAAGTTACAGCACAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTTTGGTGAATATGAAAGTGCTGAAGCTATATGCATGGGAAACACATTTTAAAAATGCTACAGAAAGCCTAAGAAATGTAGAACTCAAATTGTTAGCGGCAGTGCAATTAAGAAGGGCATACTTAGTCTTTCTCTTTTGGACCTCCCCTATGTTGGTCTCTGCTGCTACTTTTGTGGCATGTTACTTCCTGGAAGTTCCTTTACATGCAAATAATGTTTTCACTTTTATAGCAACTTTACGCCTTGTGCAAGAACCAATTACTGCCATCCCAGATGTTATTGGGGTGGTAATTCAAGCAAAAGTTGCATTTGCTCGGATTGTTAAATTCCTTGAGGCACCTGAACTGCAGAGTGAAAATTTCAGGAACAAGAGTTCTAATGACAATCTCAGAGGCTCAATTTCAATCAAATCTGCTGACTTTTCATGGGAAGGTAATGTATCAAAGCCAACACTAAGGAACATGAATTTGGAAGTTAGATATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGGTCAGGAAAATCAACCCTCTTAGCAACAATTCTTGGAGAAGTTCCTAATACAAAGGGAACTATTGAAGTTTATGGAAAGTTTGCATATGTTTCTCAAACTGCATGGATACAGACGGGTACAATAAGGGAAAATATTTTGTTTGGATCTGATTTGGATGCTCAAAGATATCAAGAAACACTTCATAGATCTTCACTACTGAAGGACCTTGAGTTGTTTCCCCATGGGGACCTCACTGAAATAGGTGAGAGAGGAGTTAACCTGAGTGGAGGACAGAAGCAGCGAGTTCAACTTGCCCGTGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCATTCAGTGCAGTTGATGCACATACTGCTACAAATTTGTTTAATGAATACATCATGGATGGGCTTAAAGGAAAGACTGTCTTGCTCGTGACTCATCAAGTTGACTTCCTCCCAGCGTTTGATTCTGTTTTGTTGATGTCAGATGGGGAAATCCTACAAGCTGCTCCATATCACCATCTGTTGAACTCAAGCAAAGAATTCCAGGACCTTGTCAATGCTCACAAGGAAACTGGTGGTTCTGACCAGCTTGTGAATGTTACTTCTGCACAGAGACAGACAAATTCTGTTAAAGAGATTACACAAACTTTCTTGGAGAAAAATTTTAAAGCAGCAGATGGAAATAAATTAATTAAGCAAGAAGAGAGAGAGATAGGAGACAAAGGGTTGAAGCCTTACTTACAGTATCTGAATCAGATGAAAGGCTATATATACTTCATTGTGGCTTCCCTTTGTCACCTTTCTTTTGTCATTTGCCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCCCATGTCAGCACTTTGAGATTGATTCTAGTTTACTTCATGATTGGAGCTATTTCAACAGTTTTCTTGTTGATCAGAGGTCTACTTGTGGTTGCTTTAGGTCTTCAATCATCAAAAAATTTATTTTTGAAGTTAATGAACTCCCTTTTTCGTGCACCCATGTCTTTTTATGACTCTACACCTTTGGGAAGGATACTTAGTAGGGTCTCATCAGATCTGAGCATTGTGGATCTTGATGTCCCATTTACCCTCACTTTTACTGTGGCAGGTACTATAAATTGTTATTCCAATCTTACAGTTTTAGCAGTTGTCACTTGGCAAGTGTTGGTTGTCTCTATACCAATGATTTACATTGCAATTCGCTTGCAGAGATACTACTTTGCCTCTGCAAAAGAAGTGATGCGGATGAATGGCACAACAAAATCCTTTTTGGCTAATCATTTAGCTGAAACTGTTGCTGGGGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTTAAGAAGAATCTTGATCTAATTGATACCAATGCTAATCCTTTCTTCCATAGTTTTGCCTCAAATGAGTGGTTGATCCAAAGGTTAGAAACAGTTTGTGCATTTGTTCTTGCCTCCGCGGCTCTTTGCATGGTTATGCTTCCTCCTGGGACTTTAGCCTCTGGATTTATTGGCATGGCCCTTTCTTATGGCCTTTCACTAAACGCTTCCTTGGTATTTTCCATTCAATTTCAATGCACTCTAGCAAATTATATAATATCTGTGGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCCCCAGAAATGATAGAAGGAAATCGTCCTCCTAAGAATTGGCCACTTGCAGGAAAAATAGAAATAAATGACTTGCAGATCTCAAACTAG 3729 0.3929 MEDFWSIICGDSGCSVTGGKPFCYDFKLLKDPSTCINHLLIIGFDVSLLIMLSFTMIQKSSSRPFWDLIKLGRYSNLQLVSAITSGSLGLLHLCLGIWVLEEKLREMHTAFPLNWWLLEFFQGFTWLLVGLTVSLQLKQLPRAWLWLFSILIFFVSGILCALSMSYAISSRELSLKEALDVLSFPGAILLLLCTHKVRKCEDNDREIDESLYAPLNGQLNEVDPINYVTPFAKAGFFSKMSFWWLNPLMKRGQEKTLEDEDIPKLRDSDRAESCYLMFVERLNRKKQKEPPSQSLVLWTIVLCHWREILISGFFALLKVITQSSGPVLLNSFILVAEGNERFKYEGYVLAISLFFIKIIESLSQRQWYFRTRLVGMKVRSQLTAAIYKKQLRLSNAARLTHSGGEIMNYVTVDAYRIGEFPFWFHQTWTTSFQLCIALVILFRAVGLATIASMVVIVLTVLCNAPLAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWETHFKNATESLRNVELKLLAAVQLRRAYLVFLFWTSPMLVSAATFVACYFLEVPLHANNVFTFIATLRLVQEPITAIPDVIGVVIQAKVAFARIVKFLEAPELQSENFRNKSSNDNLRGSISIKSADFSWEGNVSKPTLRNMNLEVRYGQKVAICGEVGSGKSTLLATILGEVPNTKGTIEVYGKFAYVSQTAWIQTGTIRENILFGSDLDAQRYQETLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRVQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYIMDGLKGKTVLLVTHQVDFLPAFDSVLLMSDGEILQAAPYHHLLNSSKEFQDLVNAHKETGGSDQLVNVTSAQRQTNSVKEITQTFLEKNFKAADGNKLIKQEEREIGDKGLKPYLQYLNQMKGYIYFIVASLCHLSFVICQILQNSWMAANVDNPHVSTLRLILVYFMIGAISTVFLLIRGLLVVALGLQSSKNLFLKLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFTLTFTVAGTINCYSNLTVLAVVTWQVLVVSIPMIYIAIRLQRYYFASAKEVMRMNGTTKSFLANHLAETVAGAVTIRAFEEEDRFFKKNLDLIDTNANPFFHSFASNEWLIQRLETVCAFVLASAALCMVMLPPGTLASGFIGMALSYGLSLNASLVFSIQFQCTLANYIISVERLNQYMHIPSEAPEMIEGNRPPKNWPLAGKIEINDLQISN 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3467g00003 1242 FunFam ABC transporter C family member 10 292 605 - -
Gabi3467g00003 1242 Pfam ABC transporter transmembrane region 917 1160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3467g00003 1242 Pfam ABC transporter transmembrane region 308 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3467g00003 1242 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524|GO:0016887
Gabi3467g00003 1242 SMART AAA_5 651 824 IPR003593 GO:0016887
Gabi3467g00003 1242 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Gabi3467g00003 1242 FunFam ABC transporter C family member 5 882 1214 - -
Gabi3467g00003 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3467g00003 1242 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016020
Gabi3467g00003 1242 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016020
Gabi3467g00003 1242 Gene3D ABC transporter type 1, transmembrane domain 280 606 IPR036640 GO:0005524|GO:0016020
Gabi3467g00003 1242 SUPERFAMILY ABC transporter transmembrane region 905 1213 IPR036640 GO:0005524|GO:0016020
Gabi3467g00003 1242 CDD ABC_6TM_ABCC_D2 919 1208 IPR044726 GO:0140359
Gabi3467g00003 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3467g00003 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Gabi3467g00003 1242 CDD ABCC_MRP_domain1 624 824 - -
Gabi3467g00003 1242 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 231 1240 - -
Gabi3467g00003 1242 Gene3D - 619 853 IPR027417 -
Gabi3467g00003 1242 FunFam ABC transporter C family member 10 607 860 - -
Gabi3467g00003 1242 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Gabi3467g00003 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 847 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3467g00003 Gabi-Chr3467 38367 49465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3467g00003 575 872 Calmodulin-binding Proteins AT2G36910 27.445 6.40e-27 117