Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3466g00008 ATGGGTTGGTTTACCAAGCTGCTTAAGGGGTCCAATCGTAAATATTCAGGAGGACAAAGTAATGGGAAATATGGAGATGATAGAATTTCGAGTGATCATGATTATTCAGTGGATGATTTGACGGATGTTGAGAAAGAAGAAATTGATTGTGCTATAGCGCTCTCTCTTTCGGAAGAAGATCAGAAAGGGAAAAAAGTTATTGAGGATGACTCTGAAGATGATGGACAACCTCAATCTGAAGATGATGAACAACTGTGTCAAATTGATGAGAAGGAAGATGAATGTCTTGGTGAAGTTCAACAAGAGGAAGATGACTATCCTGCAAAAGTTCAACAGGATGAAGATAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGAGCAATTCAAGAAAGTTGGAGCATTGGTTCTCATCCTCGATCTGACACTGGTTCTTTATTTCAACCTTTTTCACACCTCTTTCCACCTGTATACAGAATCTGTGCTGGGTGCAATGCCGAGATTGGCCATGGAAGATTTTTGAGTTGCGCGGGAGCTGTCTGGCATCCAGAATGTTTCTGTTGTCATGCTTGTAAACTGCCAATCACTGATTATGAGTTCTCCATGTCTGGAAATCACCGTTACCATAAATCTTGCTATAAAGCGCTGCATCACCCCAGATGTGATGTTTGCAAGAACTTTATCCCATATAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATACTGTCCATCACATGAGCAAGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAAGGGACACAAAATATCTATTGCTTGATGATGGACGAAAACTGTGTCTTGAGTGTCTTGACTCAGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAATAAAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGGGAAAAGAATGGTCATCATATCGTATCTGAAACTAGAGGACTTTGCTTATCAGAAGAGCAAACTGTCCCCATGATTTTAAGGAGACCAAGTATTGGGGCAGGCTACCGGGTCATAGATATGATAACTGAGCCTTATAGGCTGATTCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACAGGAACGATCCTAGCTCACGAAATGATGCATGCTTGGCTTAGGCTTAACGGCTTTGGCACTAATCTGAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATATATTCTGGCTCTGGGAGTGATGGTGCATCATCATCATCTTCATCATCCTCGTCATCACCTTCCTCCACTACATCATCAAAGAAGGGTAAACGTTCTGACTTTGAGAAGGAAGTTGGTAATTTTTTTAAACACCAGATTGAGACAGATAGCTCATCAACATATGGAGAGGGATTCAGACAGGGCAACAAGGCAGTGCTCAAGTATGGACTTGGAAGGACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGA 1605 0.4137 MGWFTKLLKGSNRKYSGGQSNGKYGDDRISSDHDYSVDDLTDVEKEEIDCAIALSLSEEDQKGKKVIEDDSEDDGQPQSEDDEQLCQIDEKEDECLGEVQQEEDDYPAKVQQDEDKHLDEVQLEEDEQLARAIQESWSIGSHPRSDTGSLFQPFSHLFPPVYRICAGCNAEIGHGRFLSCAGAVWHPECFCCHACKLPITDYEFSMSGNHRYHKSCYKALHHPRCDVCKNFIPYNSAGLIEYRAHPFWRQKYCPSHEQDGTPRCCSCQRMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIKQQIPMLLVERQALNEAMEGEKNGHHIVSETRGLCLSEEQTVPMILRRPSIGAGYRVIDMITEPYRLIRRCEVTAILVLYGLPRLLTGTILAHEMMHAWLRLNGFGTNLRPEVEEGICQVLAHMWLDSEIYSGSGSDGASSSSSSSSSSPSSTTSSKKGKRSDFEKEVGNFFKHQIETDSSSTYGEGFRQGNKAVLKYGLGRTLDHIRMTGSFPY 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3466g00008 534 MobiDBLite consensus disorder prediction 455 476 - -
Gabi3466g00008 534 SMART lim_4 164 216 IPR001781 -
Gabi3466g00008 534 MobiDBLite consensus disorder prediction 455 481 - -
Gabi3466g00008 534 Pfam LIM domain 165 218 IPR001781 -
Gabi3466g00008 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 190 - -
Gabi3466g00008 534 MobiDBLite consensus disorder prediction 59 84 - -
Gabi3466g00008 534 CDD LIM_DA1 165 217 - -
Gabi3466g00008 534 SMART uim 124 143 IPR003903 -
Gabi3466g00008 534 SMART uim 43 62 IPR003903 -
Gabi3466g00008 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 192 246 - -
Gabi3466g00008 534 PANTHER PROTEIN DA1-RELATED 2 3 534 IPR045218 -
Gabi3466g00008 534 ProSitePatterns LIM zinc-binding domain signature. 165 199 IPR001781 -
Gabi3466g00008 534 ProSiteProfiles LIM domain profile. 163 223 IPR001781 -
Gabi3466g00008 534 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 124 136 IPR003903 -
Gabi3466g00008 534 Pfam Protein DA1 314 529 IPR022087 -
Gabi3466g00008 534 Gene3D Cysteine Rich Protein 162 222 - -
Gabi3466g00008 534 MobiDBLite consensus disorder prediction 1 35 - -
Gabi3466g00008 534 FunFam Protein DA1-related 1 159 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3466g00008 Gabi-Chr3466 100341 106730 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3466g00008 DA1-like 3.9e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3466g00008 - - gmx:100813890 881.322