Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3466g00007 ATGGGTTGGTTTACCAAGCTGCTTAAGGGGTCCAATCGTAAATATTCAGGAGGACAAAGTAATGGGAAATATGGAGATGATAGAATTTCGAGTGATCATGATTATTCAGATGATTTGACGGATGTTGAGAAAGAAGAAATTGATTGTGCTATAGCGCTCTCTCTTTCGGAAGAAGATCAGAAAGGGAAAAAAGTTATTGAGGATGACTCTGAAGATGATGGACAACCTCAATCTGAAGATGATGAACAACTGTGTCAAATTGATGAGAAGGAAGATGAATGTCTTGGTGAAGTTCAACAAGAGGAAGATGACTATCCTGCAAAAGTTCAACAGGATGAAGATAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGAGCAATTCAAGAAAGTTGGAGCATTGGTTCTCATCCTCGATCTGACACTGGTTCTTTATTTCAACCTTTTTCACACCTCTTTCCACCTGTATACAGAATCTGTGCTGGGTGCAATGCCGAGATTGGCCATGGAAGATTTTTGAGTTGCGCGGGAGCTGTCTGGCATCCAGAATGTTTCTGTTGTCATGCTTGTAAACTGCCAATCACTGATTATGAGTTCTCCATGTCTGGAAATCACCGTTACCATAAATCTTGCTATAAAGCGCTGCATCACCCCAGATGTGATGTTTGCAAGAACTTTATCCCATATAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATACTGTCCATCACATGAGCAAGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAAGGGACACAAAATATCTATTGCTTGATGATGGACGAAAACTGTGTCTTGAGTGTCTTGACTCAGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAATAAAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGGGAAAAGAATGGTCATCATATCGTATCTGAAACTAGAGGACTTTGCTTATCAGAAGAGCAAACTGTCCCCATGATTTTAAGGAGACCAAGTATTGGGGCAGGCTACCGGGTCATAGATATGATAACTGAGCCTTATAGGCTGATTCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACAGGAACGATCCTAGCTCACGAAATGATGCATGCTTGGCTTAGGCTTAACGGCTTTGGCACTAATCTGAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATATATTCTGGCTCTGGGAGTGATGGTGCATCATCATCATCTTCATCATCCTCGTCATCACCTTCCTCCACTACATCATCAAAGAAGGGTAAACGTTCTGACTTTGAGAAGGAAGTTGGTAATTTTTTTAAACACCAGATTGAGACAGATAGCTCATCAACATATGGAGAGGGATTCAGACAGGGCAACAAGGCAGTGCTCAAGTATGGACTTGGAAGGACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGA 1602 0.4132 MGWFTKLLKGSNRKYSGGQSNGKYGDDRISSDHDYSDDLTDVEKEEIDCAIALSLSEEDQKGKKVIEDDSEDDGQPQSEDDEQLCQIDEKEDECLGEVQQEEDDYPAKVQQDEDKHLDEVQLEEDEQLARAIQESWSIGSHPRSDTGSLFQPFSHLFPPVYRICAGCNAEIGHGRFLSCAGAVWHPECFCCHACKLPITDYEFSMSGNHRYHKSCYKALHHPRCDVCKNFIPYNSAGLIEYRAHPFWRQKYCPSHEQDGTPRCCSCQRMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIKQQIPMLLVERQALNEAMEGEKNGHHIVSETRGLCLSEEQTVPMILRRPSIGAGYRVIDMITEPYRLIRRCEVTAILVLYGLPRLLTGTILAHEMMHAWLRLNGFGTNLRPEVEEGICQVLAHMWLDSEIYSGSGSDGASSSSSSSSSSPSSTTSSKKGKRSDFEKEVGNFFKHQIETDSSSTYGEGFRQGNKAVLKYGLGRTLDHIRMTGSFPY 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3466g00007 533 ProSitePatterns LIM zinc-binding domain signature. 164 198 IPR001781 -
Gabi3466g00007 533 Gene3D Cysteine Rich Protein 161 221 - -
Gabi3466g00007 533 PANTHER PROTEIN DA1-RELATED 2 3 533 IPR045218 -
Gabi3466g00007 533 MobiDBLite consensus disorder prediction 1 41 - -
Gabi3466g00007 533 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 123 135 IPR003903 -
Gabi3466g00007 533 SMART lim_4 163 215 IPR001781 -
Gabi3466g00007 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 245 - -
Gabi3466g00007 533 SMART uim 123 142 IPR003903 -
Gabi3466g00007 533 SMART uim 42 61 IPR003903 -
Gabi3466g00007 533 CDD LIM_DA1 164 216 - -
Gabi3466g00007 533 Pfam Protein DA1 313 528 IPR022087 -
Gabi3466g00007 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 159 189 - -
Gabi3466g00007 533 MobiDBLite consensus disorder prediction 26 41 - -
Gabi3466g00007 533 MobiDBLite consensus disorder prediction 454 475 - -
Gabi3466g00007 533 ProSiteProfiles LIM domain profile. 162 222 IPR001781 -
Gabi3466g00007 533 MobiDBLite consensus disorder prediction 454 480 - -
Gabi3466g00007 533 FunFam Protein DA1-related 1 158 217 - -
Gabi3466g00007 533 MobiDBLite consensus disorder prediction 58 83 - -
Gabi3466g00007 533 Pfam LIM domain 164 217 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3466g00007 Gabi-Chr3466 100341 106730 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3466g00007 DA1-like 3.8e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3466g00007 - - gmx:100813890 876.7