Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3466g00005 ATGGCTTTCTTCTTCCTTCCCTCTCATACACTATTTCTTGCACTCATGTTCTTTTCAGCCACCCATATCCTAGCACAATTGCCACAGACCAATGGAACAAACTTTTCATGCCCTGTGGATTCACCTCCTTCCTGTGACACGTATGTAGCATATTTTGCTCAGTCTCCAAATTTTTTGAGTCTGATGAACATATCTGATATATTTGACACCAGTCCTCTATCTATTGCAAGTGCCAGTAACATGAAGACCGAATATGATGAGCTTATTCCAGGCCAACTCTTACTGGTACCTGTAACTTGTGGTTGCACTGGAAACCACTCTTTCAGTTTCGCCAATATCTCATATGAGATCAAGCTAGGTGATAGCTACTACTATCTTTCAACCACTTCATATGAGAATCTCACCAATTGGCAAACAGTGAAAGATTTAAACCCCTATCTTGATCCATATAAGTTGCAAATAGGTATGAAAGTAGTGATCCCTTTGTTCTGCAGGTGCCCCTCAAACTACCAGAAAGAGAAAGGGATAGAGTATCAGATTACTTATGTGTGGCAGTCCAATGACAATGTTTCCCATGTAGCTTCCAAGTTTGGTGCATCACAAGTGGACATGATGACTGAAAACAACTTGGGGCAGAACTTCACTGCAGCAACCAACCTTCCTGTTTTAATCCCAGTGACACAGTTTCCATCTCTTTCTCAATCTTATTCTTTAAATGAAAGAAAGAGAAGCAATCATCTTCTGATTATCATTGTCATTGGGACTAGCCTTGGATGCACTCTTCTGATTGCACTTTTAGTACTGGTTTATGTATATTGTCTGAGGATGAAGAAGAGAAGGACTAATCAGAATTGGAGTGTGCCATCTGGGGAGACTGCAGATAAGCTAATTTCTGGAGTTTCAGGCTATGTAAGTAAGCCAACTGTGTATGAAGTTGGTGTGATTATGGAAGCTACCATGAACCTCAATGAACAGTGCAGGATTGGGGATTCAATGTACAAGGCCAAAATGGATGGTTTGGTTTTAGCTGTGAAAAAAGTCAAGGAAGATGTAGCAGAGGAGGTAATGATTCTACAAAAAGTAAATCATGCTAATCTTGTGAAACTAATGGGAGTCTCTTCAGGAAACGATGGAAATTTCTTCCTTGTATATGAATTTGCTGAAAATGGATCTCTTCATAACTGGTTGTTCTCTGAGTCTTCCACTGCTTCAAGCTCAGTGACTTTCCTCACATGGAGTCAGAGGATAAGCATAGCTATTGATGTTGCTATGGGTCTGCAATACATGCATGAACACACACAACCAAGTATAGTCCACAGGGACATCACAACAAGTAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTTTCTGTGGCCAGAACTTCAACGAATCCTATGATAACAAAAATAGATGTCTTTGCTTATGGAGTGATTCTGTTGGAGTTACTGACAGGCAAGAGAAACTTAACAAACAATGCAAATGGAGAGGTGGTTATGCTGTGGAAGGACATTAGAGGGATCTTTGATCAACAAGAGAAAAGAGAGGAGAGGCTTAGAAGATGGATGGATCCTAAGCTTGGGGGATTTTATTCTGTTGATGATGCTCTCAGCTTGGCCTCTTTAGCAGTGAATTGCACAGCAGAAAAGTCTTTGTCAAGACCAACCATGGGAGAAGTTGTTCTTAGCCTCTCCCTTCTTACACAACACTCTCCTACAACATTAGAGAGATCATGGAATTATTATGGGTTAGGTGTAGAAGTTACTAGAATAGTTACTCCCGTTGCAGCTCGTTGA 1806 0.4048 MAFFFLPSHTLFLALMFFSATHILAQLPQTNGTNFSCPVDSPPSCDTYVAYFAQSPNFLSLMNISDIFDTSPLSIASASNMKTEYDELIPGQLLLVPVTCGCTGNHSFSFANISYEIKLGDSYYYLSTTSYENLTNWQTVKDLNPYLDPYKLQIGMKVVIPLFCRCPSNYQKEKGIEYQITYVWQSNDNVSHVASKFGASQVDMMTENNLGQNFTAATNLPVLIPVTQFPSLSQSYSLNERKRSNHLLIIIVIGTSLGCTLLIALLVLVYVYCLRMKKRRTNQNWSVPSGETADKLISGVSGYVSKPTVYEVGVIMEATMNLNEQCRIGDSMYKAKMDGLVLAVKKVKEDVAEEVMILQKVNHANLVKLMGVSSGNDGNFFLVYEFAENGSLHNWLFSESSTASSSVTFLTWSQRISIAIDVAMGLQYMHEHTQPSIVHRDITTSNILLDSNFKAKIANFSVARTSTNPMITKIDVFAYGVILLELLTGKRNLTNNANGEVVMLWKDIRGIFDQQEKREERLRRWMDPKLGGFYSVDDALSLASLAVNCTAEKSLSRPTMGEVVLSLSLLTQHSPTTLERSWNYYGLGVEVTRIVTPVAAR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3466g00005 601 Pfam LysM domain 115 161 IPR018392 -
Gabi3466g00005 601 Pfam Protein tyrosine and serine/threonine kinase 346 466 IPR001245 GO:0004672|GO:0006468
Gabi3466g00005 601 ProSitePatterns Tyrosine protein kinases specific active-site signature. 437 449 IPR008266 GO:0004672|GO:0006468
Gabi3466g00005 601 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Gabi3466g00005 601 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 575 - -
Gabi3466g00005 601 Gene3D Transferase(Phosphotransferase) domain 1 469 584 - -
Gabi3466g00005 601 Gene3D Transferase(Phosphotransferase) domain 1 391 468 - -
Gabi3466g00005 601 SUPERFAMILY Protein kinase-like (PK-like) 332 568 IPR011009 -
Gabi3466g00005 601 Gene3D Phosphorylase Kinase; domain 1 308 390 - -
Gabi3466g00005 601 ProSiteProfiles Protein kinase domain profile. 290 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3466g00005 Gabi-Chr3466 39655 41460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3466g00005 44 568 Receptor kinase-like Gene Family AT2G23770 28.351 1.06e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3466g00005 PK_Tyr_Ser-Thr 1.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3466g00005 - - gmx:100301877 767.689