Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3466g00004 ATGTTATTCATTCCAAATGTTAGTTCCACCAAGCAATCCAAGAAAGCACAAGGCTTGAAAATGAATGTTATTGATCAATGCTGGAGATTGGATCCTGAATGGAGGAAAAATCGGACACAGCTTGCCACATGCTCGGTGGGCTATGCAGGGAAAATGACAAACAACATAGGAAAGGACCTCATCTATTATGAAGTTACTGATCCTAGTGACGACCCAATAAACCCCAAACCTGGCACCTTGAGATATGGAGCTTCTAGGATTCATGGTAAAGTGTGGATCACATTCCAAAGAGACATGCAAATTAGGCTCGAGAGACCCCTCCTCATTAGCAGTTTCACCACCATTGATGGTCGAGGCGTCGACGTTCACATTGCTAACAATGCATGCTTGATGATTTATAAGGCAAGCAACATAATCATCCATGGGATTAGGATTCATCACTGCAGACCTCAAGCTCCTGGAATGGTGATGGATCCTAATGGAAAGGTAATTCCTTTGGGTCAGGTAGATGGAGATGCAATAAGATTGGTCACGGCTTCAAAGATTTGGATTGATCATAACACGCTTTCTGATTGCCAAGATGGTCTTCTTGATGTCACACGTGGTTCCACTGATGTGACAGTCTCCAACAACTGGTTCAGGGAGCAAAACAAGGTTATGCTTCTCGGGCATGATGATGGGTACGTGAGAGACAAAAACATGAAGGTCACTGTTGTGTACAACTATTTTGGACCTGATTGCCACCAGCGCATGCCAAGAATCCGTCATGGGTATGCTCATGTTGCGAACAATCTTTACATGGGATGGGTGCAATATGCCATAGGTGGAAGCAAGGAACCTAGCCTCAAAAGCCAAGCGAACCTTTTCATAGCACCAACCACAGGGAATAAGGAGGTGACATGGAGAAAAAGCAGTAATGGAGTTGGAGACACATGGGAATTTTTTTCAGTGAGGGACGCTTTTGAAAACGGAGCATCCTTCATGGAAACAAAAGGTGGACAGGTAAAAAAGCCGAATTATAGCACTGAACAGAAGTTTGAAGTTGCTGATGCCAAATTGGTGAGATCATTGACAATCTCATCGGGCGTGTTACGATGCAGTAAAACCTCTGTATGTTGA 1119 0.4397 MLFIPNVSSTKQSKKAQGLKMNVIDQCWRLDPEWRKNRTQLATCSVGYAGKMTNNIGKDLIYYEVTDPSDDPINPKPGTLRYGASRIHGKVWITFQRDMQIRLERPLLISSFTTIDGRGVDVHIANNACLMIYKASNIIIHGIRIHHCRPQAPGMVMDPNGKVIPLGQVDGDAIRLVTASKIWIDHNTLSDCQDGLLDVTRGSTDVTVSNNWFREQNKVMLLGHDDGYVRDKNMKVTVVYNYFGPDCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSKEPSLKSQANLFIAPTTGNKEVTWRKSSNGVGDTWEFFSVRDAFENGASFMETKGGQVKKPNYSTEQKFEVADAKLVRSLTISSGVLRCSKTSVC 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3466g00004 372 PRINTS Pollen allergen Amb family signature 250 269 IPR018082 -
Gabi3466g00004 372 PRINTS Pollen allergen Amb family signature 343 366 IPR018082 -
Gabi3466g00004 372 PRINTS Pollen allergen Amb family signature 170 191 IPR018082 -
Gabi3466g00004 372 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Gabi3466g00004 372 PRINTS Pollen allergen Amb family signature 106 122 IPR018082 -
Gabi3466g00004 372 PRINTS Pollen allergen Amb family signature 69 94 IPR018082 -
Gabi3466g00004 372 PRINTS Pollen allergen Amb family signature 312 336 IPR018082 -
Gabi3466g00004 372 SMART amb_all 98 295 IPR002022 -
Gabi3466g00004 372 Pfam Pectate lyase 109 289 IPR002022 -
Gabi3466g00004 372 SUPERFAMILY Pectin lyase-like 20 338 IPR011050 -
Gabi3466g00004 372 Gene3D - 21 365 IPR012334 -
Gabi3466g00004 372 PANTHER PECTATE LYASE 18-RELATED 11 369 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3466g00004 Gabi-Chr3466 32738 35614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3466g00004 52 299 Polysaccharide Lyase AT5G09280 69.355 3.59e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3466g00004 K01728 - gmx:100811216 654.825