Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3465g00002 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATGAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATAATAATAACAGCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1545 0.4013 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDMRINRDQDEREPDNNNSRDLNLQRFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3465g00002 514 ProSiteProfiles PAH domain profile. 211 281 IPR003822 GO:0006355
Gabi3465g00002 514 MobiDBLite consensus disorder prediction 157 185 - -
Gabi3465g00002 514 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi3465g00002 514 Gene3D Paired amphipathic helix 209 282 IPR036600 GO:0006355
Gabi3465g00002 514 PANTHER SIN3B-RELATED 9 514 IPR039774 GO:0003714
Gabi3465g00002 514 MobiDBLite consensus disorder prediction 119 148 - -
Gabi3465g00002 514 SUPERFAMILY PAH2 domain 212 279 IPR036600 GO:0006355
Gabi3465g00002 514 Coils Coil 414 444 - -
Gabi3465g00002 514 FunFam Paired amphipathic helix protein SIN3 208 283 - -
Gabi3465g00002 514 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi3465g00002 514 Pfam Paired amphipathic helix repeat 233 278 IPR003822 GO:0006355
Gabi3465g00002 514 MobiDBLite consensus disorder prediction 299 324 - -
Gabi3465g00002 514 SMART hdac_interact2seq4b 341 441 IPR013194 -
Gabi3465g00002 514 MobiDBLite consensus disorder prediction 89 109 - -
Gabi3465g00002 514 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi3465g00002 514 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi3465g00002 514 Pfam Sin3 family co-repressor 343 435 IPR013194 -
Gabi3465g00002 514 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi3465g00002 514 MobiDBLite consensus disorder prediction 83 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3465g00002 Gabi-Chr3465 64656 68169 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3465g00002 Sin3_corepress 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3465g00002 K11644 - gmx:100807181 806.594