Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00098 ATGGAGAAAAATGGGAATGTATTGATGCAGAAGTATGAGTTTGGCAGACTATTAGGTCAAGGAAACTTTGCGAAGGTTTATCATGCAAGGGACCTCAGAACCGGGGACAATGTTGCCGTTAAGGTGATGGACAAGGAGAAAATTCTAAAAGTTGGGTTGGTTGATCAAACTAAGCGAGAGATATCTATTATGAGACTGGTTAAACACCCAAATGTTTTGCAGCTTTATGAGGTCTTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACGAGGTAGCTAAAGGTAAACTCCATGAGGACATAGCAAGGAAGTACTTCCAACAATTGATCAGCGGTGTTGATTTTTGCCATAGCAGGGGTGTTTATCACAGGGATTTGAAGCCAGAAAACTTGCTTTTGGATGAGAATGAAGTTCTCAAGGTAGCAGATTTTGGACTGAGTGCACTTGTTGAATCTCATAGTCAAGGCATCATGCTGCACACAGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGTGGAAATGGTTATGATGGAACTAAAGCTGATGTATGGTCTTGTGGAGTAATCTTGTTTGTTCTTTTGGCTGGTCATTTACCATTCTATGATTTGAATCTTATAGTACTGTATAAGAAAATAAGCAAGGCAAAGTACAAATTTCCAAACTGGTTTTCATTTGAAGTGCGCAGACTATTAGCAAAGATCCTTGACCCCAACCCAGAAACTAGGATATCCATGGCAAAATTTTTGGAAAATTCCTGGTTCAGAAAAGGTTTCAACTCCAAATCTGATGAACTGAAAGGAGAGGTTACAAATGTGACTTCAGTTGATTTTGATGAAGCTCTTGGTGCGTCATTGGCAAGTTTTAATGCTTTTGATATAATTTCTCTGTCCGCTGGGCTTGACTTGTCTGGCTTTTTTGTAAGCAATGATGAACAGGAAGACATGAAATTTACATCCATGAGCTCTGCCTCTTCTATTGTGTCTACAATGGAGGATGTTGCTCGCATTCTGGGGATGAAGATACTTAAGAAGGATGGGGGGTTGCTGAAATTGGAGAGATCCAGGGAAGGTAGAAGAGAACTGCTTTCCATAGATGCTGAAATATTTGAGTTAACCCCATCTCTCCATTTGGTTGAGATGAAGAAATCCTGTGGTGATACATTAGAATACCAGAGGATATTGAAAGATGATATAAGACCAGCTCTTAAAGATATTGTCTGGGTTTGGCAAGGTGAGCGGCAATAG 1281 0.4012 MEKNGNVLMQKYEFGRLLGQGNFAKVYHARDLRTGDNVAVKVMDKEKILKVGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNEVAKGKLHEDIARKYFQQLISGVDFCHSRGVYHRDLKPENLLLDENEVLKVADFGLSALVESHSQGIMLHTVCGTPAYVAPEVISGNGYDGTKADVWSCGVILFVLLAGHLPFYDLNLIVLYKKISKAKYKFPNWFSFEVRRLLAKILDPNPETRISMAKFLENSWFRKGFNSKSDELKGEVTNVTSVDFDEALGASLASFNAFDIISLSAGLDLSGFFVSNDEQEDMKFTSMSSASSIVSTMEDVARILGMKILKKDGGLLKLERSREGRRELLSIDAEIFELTPSLHLVEMKKSCGDTLEYQRILKDDIRPALKDIVWVWQGERQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00098 426 Pfam NAF domain 298 354 IPR004041 GO:0007165
Gabi3462g00098 426 Gene3D Kinase associated domain 1, KA1 300 420 - -
Gabi3462g00098 426 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 415 - -
Gabi3462g00098 426 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00098 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi3462g00098 426 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00098 426 FunFam Non-specific serine/threonine protein kinase 295 419 - -
Gabi3462g00098 426 FunFam Non-specific serine/threonine protein kinase 6 296 - -
Gabi3462g00098 426 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Gabi3462g00098 426 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Gabi3462g00098 426 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00098 426 CDD CIPK_C 301 415 - -
Gabi3462g00098 426 SUPERFAMILY Protein kinase-like (PK-like) 8 279 IPR011009 -
Gabi3462g00098 426 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gabi3462g00098 426 FunFam Non-specific serine/threonine protein kinase 3 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00098 Gabi-Chr3462 1074894 1076285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00098 1 425 CBL-interacting serine-threonine protein kinases AT5G58380 58.407 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3462g00098 Pkinase 4.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00098 K07198 - gmx:100816254 649.818