Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00097 ATGGAGAAAAATGGGAATGTATTGATGCAGAAGTATGAGTTTGGCAGACTATTAGGTCAAGGAAACTTTGCGAAGGTTTATCATGCAAGGGACCTCAGAACCGGGGACAATGTTGCCGTTAAGGTGATGGACAAGGAGAAAATTCTAAAAGTTGGGTTGGTTGATCAAACTAAGCGAGAGATATCTATTATGAGACTGGTTAAACACCCAAATGTTTTGCAGCTTTATGAGGTCTTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACGAGGTAGCTAAAGGTAAACTCCATGAGGACATAGCAAGGAAGTACTTCCAACAATTGATCAGCGGTGTTGATTTTTGCCATAGCAGGGGTGTTTATCACAGGGATTTGAAGCCAGAAAACTTGCTTTTGGATGAGAATGAAGTTCTCAAGGTAGCAGATTTTGGACTGAGTGCACTTGTTGAATCTCATAGTCAAGGCATCATGCTGCACACAGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGTGGAAATGGTTATGATGGAACTAAAGCTGATGTATGGTCTTGTGGAGTAATCTTGTTTGTTCTTTTGGCTGGTCATTTACCATTCTATGATTTGAATCTTATAGTACTGTATAAGAAAATAAGCAAGGCAAAGTACAAATTTCCAAACTGGTTTTCATTTGAAGTGCGCAGACTATTAGCAAAGATCCTTGACCCCAACCCAGAAACTAGGATATCCATGGCAAAATTTTTGGAAAATTCCTGGTTCAGAAAAGGTTTCAACTCCAAATCTGATGAACTGAAAGGAGAGGTTACAAATGTGACTTCAGCAAATCAAGCATTGGCAAGTTTTAATGCTTTTGATATAATTTCTCTGTCCGCTGGGCTTGACTTGTCTGGCTTTTTTGTAAGCAATGATGAACAGGAAGACATGAAATTTACATCCATGAGCTCTGCCTCTTCTATTGTGTCTACAATGGAGGATGTTGCTCGCATTCTGGGGATGAAGATACTTAAGAAGGATGGGGGGTTGCTGAAATTGGAGAGATCCAGGGAAGGTAGAAGAGAACTGCTTTCCATAGATGCTGAAATATTTGAGTTAACCCCATCTCTCCATTTGGTTGAGATGAAGAAATCCTGTGGTGATACATTAGAATACCAGAGGATATTGAAAGATGATATAAGACCAGCTCTTAAAGATATTGTCTGGGTTTGGCAAGGTGAGCGGCAATAG 1263 0.4006 MEKNGNVLMQKYEFGRLLGQGNFAKVYHARDLRTGDNVAVKVMDKEKILKVGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNEVAKGKLHEDIARKYFQQLISGVDFCHSRGVYHRDLKPENLLLDENEVLKVADFGLSALVESHSQGIMLHTVCGTPAYVAPEVISGNGYDGTKADVWSCGVILFVLLAGHLPFYDLNLIVLYKKISKAKYKFPNWFSFEVRRLLAKILDPNPETRISMAKFLENSWFRKGFNSKSDELKGEVTNVTSANQALASFNAFDIISLSAGLDLSGFFVSNDEQEDMKFTSMSSASSIVSTMEDVARILGMKILKKDGGLLKLERSREGRRELLSIDAEIFELTPSLHLVEMKKSCGDTLEYQRILKDDIRPALKDIVWVWQGERQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00097 420 Gene3D Kinase associated domain 1, KA1 292 414 - -
Gabi3462g00097 420 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Gabi3462g00097 420 FunFam Non-specific serine/threonine protein kinase 289 413 - -
Gabi3462g00097 420 CDD CIPK_C 295 409 - -
Gabi3462g00097 420 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Gabi3462g00097 420 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00097 420 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00097 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi3462g00097 420 ProSiteProfiles NAF domain profile. 289 313 IPR018451 GO:0007165
Gabi3462g00097 420 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00097 420 Pfam NAF domain 292 348 IPR004041 GO:0007165
Gabi3462g00097 420 FunFam Non-specific serine/threonine protein kinase 6 297 - -
Gabi3462g00097 420 Gene3D Transferase(Phosphotransferase) domain 1 92 291 - -
Gabi3462g00097 420 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 409 - -
Gabi3462g00097 420 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gabi3462g00097 420 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00097 Gabi-Chr3462 1074894 1076285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00097 1 419 CBL-interacting serine-threonine protein kinases AT5G58380 57.743 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3462g00097 Pkinase 4.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00097 K07198 - gmx:100816254 646.351