Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00095 ATGGAGAAAAATGGGAATGTATTGATGCAGAAGTATGAGTTTGGCAGACTATTAGGTCAAGGAAACTTTGCGAAGGTTTATCATGCAAGGGACCTCAGAACCGGGGACAATGTTGCCGTTAAGGTGATGGACAAGGAGAAAATTCTAAAAGTTGGGTTGGTTGATCAAACTAAGCGAGAGATATCTATTATGAGACTGGTTAAACACCCAAATGTTTTGCAGCTTTATGAGGTCTTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACGAGGTAGCTAAAGGTAAACTCCATGAGGACATAGCAAGGAAGTACTTCCAACAATTGATCAGCGGTGTTGATTTTTGCCATAGCAGGGGTGTTTATCACAGGGATTTGAAGCCAGAAAACTTGCTTTTGGATGAGAATGAAGTTCTCAAGGTAGCAGATTTTGGACTGAGTGCACTTGTTGAATCTCATAGTCAAGGCATCATGCTGCACACAGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGTGGAAATGGTTATGATGGAACTAAAGCTGATGTATGGTCTTGTGGAGTAATCTTGTTTGTTCTTTTGGCTGGTCATTTACCATTCTATGATTTGAATCTTATAGTACTGTATAAGAAAATAAGCAAGGCAAAGTACAAATTTCCAAACTGGTTTTCATTTGAAGTGCGCAGACTATTAGCAAAGATCCTTGACCCCAACCCAGAAACTAGGATATCCATGGCAAAATTTTTGGAAAATTCCTGGTTCAGAAAAGGTTTCAACTCCAAATCTGATGAACTGAAAGGAGAGGTTACAAATGAAGACATGAAATTTACATCCATGAGCTCTGCCTCTTCTATTGTGTCTACAATGGAGGATGTTGCTCGCATTCTGGGGATGAAGATACTTAAGAAGGATGGGGGGTTGCTGAAATTGGAGAGATCCAGGGAAGGTAGAAGAGAACTGCTTTCCATAGATGCTGAAATATTTGAGTTAACCCCATCTCTCCATTTGGTTGAGATGAAGAAATCCTGTGGTGATACATTAGAATACCAGAGGATATTGAAAGATGATATAAGACCAGCTCTTAAAGATATTGTCTGGGTTTGGCAAGGTGAGCGGCAATAG 1158 0.4016 MEKNGNVLMQKYEFGRLLGQGNFAKVYHARDLRTGDNVAVKVMDKEKILKVGLVDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNEVAKGKLHEDIARKYFQQLISGVDFCHSRGVYHRDLKPENLLLDENEVLKVADFGLSALVESHSQGIMLHTVCGTPAYVAPEVISGNGYDGTKADVWSCGVILFVLLAGHLPFYDLNLIVLYKKISKAKYKFPNWFSFEVRRLLAKILDPNPETRISMAKFLENSWFRKGFNSKSDELKGEVTNEDMKFTSMSSASSIVSTMEDVARILGMKILKKDGGLLKLERSREGRRELLSIDAEIFELTPSLHLVEMKKSCGDTLEYQRILKDDIRPALKDIVWVWQGERQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00095 385 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Gabi3462g00095 385 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 374 - -
Gabi3462g00095 385 Gene3D Kinase associated domain 1, KA1 262 379 - -
Gabi3462g00095 385 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00095 385 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00095 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi3462g00095 385 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Gabi3462g00095 385 CDD CIPK_C 301 374 - -
Gabi3462g00095 385 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00095 385 Gene3D Transferase(Phosphotransferase) domain 1 91 261 - -
Gabi3462g00095 385 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
Gabi3462g00095 385 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gabi3462g00095 385 FunFam Non-specific serine/threonine protein kinase 6 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00095 Gabi-Chr3462 1074894 1076285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00095 1 382 CBL-interacting serine-threonine protein kinases AT5G45820 56.706 2.34e-173 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3462g00095 Pkinase 3.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00095 K07198 - qsa:O6P43_014824 542.347