Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00088 ATGGCTTCTAGAGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTATTACGAACTCTCATGCTATAAACAAAACCTCGATCATAATCGATGCATCAAAGTATATCGAAGAGCTAAAGCAAAAAGTTGAAAGACTGAATCAAGACATAGCCACTGCACAAACCTCAAGTGACCAAAATACTTTGCCAATGGTTACAGTAGAAACCCTAGAAAAGGGATTTCATATAAATGTTTTTTCAACAAAGAGCTGTCCTGGTCTACTTGTTTCCATATTGGAGTCCTTTGAAGAGATGGGTATTAATGTGCTTGAAGCTAGGGTTACTTGTACGGACACTTTTCGATTTCAAGCTGTTGGAGGAGAAAATGAAGAACAAGGTGAGGGTGTCGATGCACAAGCTGTGAAACTGGCAGTGGGACAAGCAATAAAGAACTGGAGCGAAAGTACTGATCAAAAGTAA 471 0.4013 MASREQKRAALHEKLQLLRSITNSHAINKTSIIIDASKYIEELKQKVERLNQDIATAQTSSDQNTLPMVTVETLEKGFHINVFSTKSCPGLLVSILESFEEMGINVLEARVTCTDTFRFQAVGGENEEQGEGVDAQAVKLAVGQAIKNWSESTDQK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00088 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Gabi3462g00088 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 66 IPR036638 GO:0046983
Gabi3462g00088 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00088 Gabi-Chr3462 1013293 1015551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00088 11 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 30.345 1.49e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00088 - - gmx:100814138 258.84