Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00066 ATGACGCAAAGAAAAAGACATTTGCATCAATGGAAGCACCCATTCGATTCTTATGCCTTCGAGGCATTTGTGTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAAATTGAGTCAGGAACTCTTACCATACATTTTATGGATAATCACCATATGACCATTGAAAAAGGCTTTGCAGACATTCGGATAAGGTCAAGGAAAGCTTCTTCATCAGATTGCTCTTGCTTTTTACGACCTGGGATTGACATATGTGTGCTATCACCCTCTCAATGTAGTGATGATTCAGATGATTTTATTGATAATCCTGTGTGGGCTGATGCTAAAATAAATTCCATACAGAGAAAATCCCACGAATCTGGGTGCTCATGTCAATACTATGTGAACTTGTATGATAATCAAGGTTTCCTTGGTACACAGAAAGGAACTCTTAGTAAGGAGGTTAAAGTTGTTGAAAGAAATCAAATATCCATCCTCCAAAAGCTTGAACGTGATAGTTGTGAAGATCAGTACTATCGATGGGCTTCATCTGAAGACTGTTCCACAGTATCATCACAACCTAAACTGATTTCAGGAAATTTTCTATCCGATCTTTCATGGTTAGTTGTTGCTTCTGTTTTAACGAAGGTTTCATTCTGTGCACGATCTGTGAAAAACAAGATTGTGTATCAAGTTTTGGGAAATGATGATACTATTTGCTCTTCATCAAACACAAATTCTCATATAAATGTGGTGAACTTCAAAGTAAAAGATGGCATATTAGAACCCTTTGTTACTAAAGTTGATACATCTGACACCAAAAGCATTGGCTGCAATGCACATGATTCCCATGAAGATGAAGTGACACCACAATCTTATGAAGCTGAAGGCTTACGACGTTCCAAACGTCGCAACACACAACCTGATCGTTACCTTGGTTGTGATGTTTCAGAGTTGGATGTTGATTATGTTCAAACCAGGCCATACAAGAAAAGAAAAGGGAAAGATGATGAAGAGCCATTGCCATTAGCAATTGCAACTGGTTTATTTGAAAACTGTCCTAAAGAGGTCGATAAGGTGAGTTCTTCTAAGGAGCTTAGAGTGTACCATAGGAAGAAGAAAAGGAAGGAAGTAAATTCAGGTGATGCAAATCAAAATGAGAACCAAACTAGGGACCATAAGGTTCAGAGGAAGGATGTGTCTGAATTTGATGATATGGATATTGAACCAAGATGGGAAGGGTTAAATTCAAAAAAAGGTGTGGAAGATAAAAAGTATCATTCAATGAATACAACAAGCAGAAATCATTATGTAGAAAGAGCTTATAAAGACAGAACCTTAAATGCTGATGTTTACAAGGAAATCATAGACTCACACTTGAAGAACATGAATAAGATACCAATTGTGGAAGAGCCAAGTATTAAGGAGAAGTGGACGGAAACAAGTTGCTTCGGGAAAGAGAAGGAAGCTGAAACATCTGAAGGAGAGGCTGAGGAAGAACTCTCTGAAATGGATATGTTATGGAGAGAAATGGATATGGCATTGGCATCAAGTTATCTTGAAGAAACAGAGGGTTCAAATGCTGCCAATCTTGCTGAGAAAGTGGAAAAACCAAATGAAACTTGTCAACACGATAATAGATTGGATGAACAGATTGGAATTTACTGCCTCAAATGTGGCTATGTGACTACTGAGATAAGAAATATTTCAGCACCCTTTGTAAGTCAAGTAGAACGTCGAGGATGGTACCGAGGGGAAAAGCAATGCATTGAAGAAGAGTCAGAACCAAAGGCTGATAATGATGATGATTTCAATCTGTTCTCGACTCATGCTTCTCGTGATGAACCTATATCTGAAGAAAATCAAAACGTTTGGTCATTGATTCCTGAACTTAAAGAAAAGATGCATGTCCACCAGAAGAAAGCCTTTGAATTTCTTTGGCAAAATATTGCAGGGTCTATGAAACCAGCACTTGTGGAATCAGAATCCAAAAGAAGAGGTGGTTGTGTGATATCTCACGCTCCTGGAGCTGGAAAAACTCTTACCATTATTGCTTTTCTTGCTAGCTATTTGAAGTTATTCCCATGGAAGAGACCTCTGATCCTTGCTCCAAAAACTATACTATATACTTGGCACAAAGAATTTATCAAATGGAAGGTTTCTTTACCAGTGTATATGATTCATAGTCGTAGAAGCCAGAGAGACTTCAATGACCAATCAATGGTTCTTCCTGGAATTCCAAAGCCCACTAATGATGTCAAGCATGTTTTGGATTCATTGGATAAGATACAAAAGTGGCATGCACACCCCAGTGTTCTAGTCATGGGCTATACTTCATTTTTATCATTGACGCGAGAGAATTCAAAGTTTGCACACAGAAAGTATATGGCTAAAGTATTGAGGGAAAGCCCTGGGATCCTGATACTAGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGCTTTGATGAAAGTAGAGACAAAACTGAGAATAGTACTTTCGGGTACATTGTTTCAGAACAATTTCTGTGAATACTTTAACACACTTTGCATGGCAAGACCAAAGTTTGTTCACGAAGTGCTGAAAGAATTAGACCCTAAATATAGGAGGGGAAGTAAAACAGCAGAGAAAGCACCACATTTACTAGAGTCAAGGGCTAGGAAATTCTTCTTAGATAACATTGCTAAGAGAATTGACTCATATACTGGTGAGGTGAGGATGCAGGGTCTAAGCATGTTGAGGAAACTAACAAATAGTTTCATAGATGTTTATGATAGTGGGAATTCTGACAATCTTCCTGGTTTGCAACTTTACACGTTGTTAATGAATACAACTGATATTCAGCATGAGATTCTGCAGACACTGCACGAGAAAACGGCTGTGCTCAAGGGATACCCTCTGGAGATAGAGCTTTTGATAACACTTGGATCAATACATCCATGGTTAGTCAAAACAGCGACATGGGCTGATAAGTTTTTCACTCCTCAGCAAATGAAGCAACTAGATAAATGCAAGTTAGATTTCAAAATGGGGTCAAAGCTAAGATTTGTTTTGAACCTTGTATTTCGTGTTATCCAGAAGGAGAAGGTTCTTATCTTTTGCCACAACCATGCACCTGTGAAGTTATTAGTAGAACTATTTGAGAAGATCTTCAAATGGAAAAAGGGTAGAGAAATTTTGGTACTTAATGGGGAGCAAGAGCTCTTTGAACGTGGGAAAGTGATAGAAAAGTTTGAGGAAAATGGTGGAATATCAAAGATACTTCTTGCTTCAATTACAGCTTGTGGTGAAGGTATTAGTCTAACAGCAGCTTCTAGAGTGATTATGTTGGACTCAGAGTGGAATCCATCAAAAACTAAGCAAGCTATTGCAAGGGCTTTTCGTCCTGGTCAGCAAAAAATGGTTTATGTGTATCAGCTCTTGACAAAAGGCACATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTTTCAAGCATGATTTTCAGTGAGGCTTTTGTGGAAGATCCTTCCAAATGGCAAGCACAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGGAGGACAACTCTAAATCGATCCATATGATAATGAAGAATGAAAAGGCTTCAACAAACTGA 3618 0.3847 MTQRKRHLHQWKHPFDSYAFEAFVFGSWQAVEFIKIESGTLTIHFMDNHHMTIEKGFADIRIRSRKASSSDCSCFLRPGIDICVLSPSQCSDDSDDFIDNPVWADAKINSIQRKSHESGCSCQYYVNLYDNQGFLGTQKGTLSKEVKVVERNQISILQKLERDSCEDQYYRWASSEDCSTVSSQPKLISGNFLSDLSWLVVASVLTKVSFCARSVKNKIVYQVLGNDDTICSSSNTNSHINVVNFKVKDGILEPFVTKVDTSDTKSIGCNAHDSHEDEVTPQSYEAEGLRRSKRRNTQPDRYLGCDVSELDVDYVQTRPYKKRKGKDDEEPLPLAIATGLFENCPKEVDKVSSSKELRVYHRKKKRKEVNSGDANQNENQTRDHKVQRKDVSEFDDMDIEPRWEGLNSKKGVEDKKYHSMNTTSRNHYVERAYKDRTLNADVYKEIIDSHLKNMNKIPIVEEPSIKEKWTETSCFGKEKEAETSEGEAEEELSEMDMLWREMDMALASSYLEETEGSNAANLAEKVEKPNETCQHDNRLDEQIGIYCLKCGYVTTEIRNISAPFVSQVERRGWYRGEKQCIEEESEPKADNDDDFNLFSTHASRDEPISEENQNVWSLIPELKEKMHVHQKKAFEFLWQNIAGSMKPALVESESKRRGGCVISHAPGAGKTLTIIAFLASYLKLFPWKRPLILAPKTILYTWHKEFIKWKVSLPVYMIHSRRSQRDFNDQSMVLPGIPKPTNDVKHVLDSLDKIQKWHAHPSVLVMGYTSFLSLTRENSKFAHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKALMKVETKLRIVLSGTLFQNNFCEYFNTLCMARPKFVHEVLKELDPKYRRGSKTAEKAPHLLESRARKFFLDNIAKRIDSYTGEVRMQGLSMLRKLTNSFIDVYDSGNSDNLPGLQLYTLLMNTTDIQHEILQTLHEKTAVLKGYPLEIELLITLGSIHPWLVKTATWADKFFTPQQMKQLDKCKLDFKMGSKLRFVLNLVFRVIQKEKVLIFCHNHAPVKLLVELFEKIFKWKKGREILVLNGEQELFERGKVIEKFEENGGISKILLASITACGEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTKGTLEEDKYRRTTWKEWVSSMIFSEAFVEDPSKWQAQKIEDDILREMVEEDNSKSIHMIMKNEKASTN 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00066 1205 MobiDBLite consensus disorder prediction 271 300 - -
Gabi3462g00066 1205 SMART helicmild6 1036 1125 IPR001650 -
Gabi3462g00066 1205 Pfam Helicase conserved C-terminal domain 1008 1124 IPR001650 -
Gabi3462g00066 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 863 IPR027417 -
Gabi3462g00066 1205 CDD SF2_C_SNF 1000 1136 - -
Gabi3462g00066 1205 Gene3D - 598 891 IPR038718 -
Gabi3462g00066 1205 Pfam SNF2-related domain 627 949 IPR000330 GO:0005524|GO:0140658
Gabi3462g00066 1205 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 651 850 IPR014001 -
Gabi3462g00066 1205 SMART ultradead3 622 855 IPR014001 -
Gabi3462g00066 1205 MobiDBLite consensus disorder prediction 352 390 - -
Gabi3462g00066 1205 Gene3D - 985 1201 IPR027417 -
Gabi3462g00066 1205 MobiDBLite consensus disorder prediction 366 390 - -
Gabi3462g00066 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1190 IPR027417 -
Gabi3462g00066 1205 CDD DEXHc_ATRX-like 626 892 - -
Gabi3462g00066 1205 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1012 1172 IPR001650 -
Gabi3462g00066 1205 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 54 1204 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00066 Gabi-Chr3462 796514 801788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00066 1049 1143 RAD5 or RAD16-like Gene Family AT5G43530 41.053 1.28e-12 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3462g00066 SNF2_N 1.9e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00066 K10875 - gmx:100781856 1510.74