Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00057 ATGGATAACAGTGATGTGACACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGACCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAAATTCAAAACCTCATCCTTTCATTGACGAGTTTATCACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAAAATTTACCTGGTGTCAAGCGAGATGGAAGTGCTTCTCACTTCTTCCACAGAGCAATCAAGGCTTATAATACTGGCACTCGAAAGCGCCGGAAAATACAAGGTCAGGATGTGGGTGATGTCCGCTGGCACAAGACTGGCAAGACTAAACCAGTCATCTTGAATGGGGTTCAAAAAGGCTGCAAAAAGATTATGGTTCTGTATATGAGCCCTGTAACAGGAGGAAAAACTGAGAAAACTAATTGGGTTATGCATCAATATCACCTCGGAACAGATGAAGATGAAAAGGATGGTGAGTATGTTATCTCTAAAGTGTTTTATCAGCAACAGCAAGTCAAATTGGGTGATAAAGATGACCAGGATGTTGCTGAAGCCATTGAAACGACTGAAGCAACAATTGTGAAAGTGGATCCAGTCACTCCCAAATTAGTGACCCCTCAGCCTCCTTATAATGAAAGGCGATGTTCAGCTCTAGACTTAGGACAGGAAACACATACCATTCCTCAGAAGCTGCCTCAGATGGAGTGTTTAGATGAAATTCGAGCCGATTGCGAAGAACTTGCAAAAACTGATGCATCCGTGGTAGAAACTCAACATGATGAAGGGATGGATAATAAAGAAAATAATGGTGACGAAGGACAAAAATGGTGGGATAGTGAGTCTCAGAATCTGTTGGATTCACAACAACTGGTCGAAGCATTGTCCTTGTGTGATGATCTACTTCAAAGCCAGTCTCCCAATAGGGATGGGAAAGATGGAGAACATATGAACCAACCCAGTCTTTCTGTTTATGCTCAGCTAGGACCAGAGCATCTGAAGAAAGACATTGAAGAGTGCCAAAATCTTGTCCTTGATCCTGCAAATGTAGATCATGATACACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCGCAGGATAGCTTTGTTTCCTGGGGTTTCAACAAGGCAGTAAACTAA 1152 0.4219 MDNSDVTQEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNSKPHPFIDEFITTLEVDDGICYTHPQNLPGVKRDGSASHFFHRAIKAYNTGTRKRRKIQGQDVGDVRWHKTGKTKPVILNGVQKGCKKIMVLYMSPVTGGKTEKTNWVMHQYHLGTDEDEKDGEYVISKVFYQQQQVKLGDKDDQDVAEAIETTEATIVKVDPVTPKLVTPQPPYNERRCSALDLGQETHTIPQKLPQMECLDEIRADCEELAKTDASVVETQHDEGMDNKENNGDEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDGKDGEHMNQPSLSVYAQLGPEHLKKDIEECQNLVLDPANVDHDTPSEFRLSQLEFGSQDSFVSWGFNKAVN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00057 383 MobiDBLite consensus disorder prediction 258 279 - -
Gabi3462g00057 383 Gene3D NAC domain 22 176 IPR036093 GO:0003677|GO:0006355
Gabi3462g00057 383 Pfam No apical meristem (NAM) protein 14 152 IPR003441 GO:0003677|GO:0006355
Gabi3462g00057 383 SUPERFAMILY NAC domain 2 171 IPR036093 GO:0003677|GO:0006355
Gabi3462g00057 383 MobiDBLite consensus disorder prediction 258 277 - -
Gabi3462g00057 383 ProSiteProfiles NAC domain profile. 13 171 IPR003441 GO:0003677|GO:0006355
Gabi3462g00057 383 FunFam NAC domain-containing protein 8 22 175 - -
Gabi3462g00057 383 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 343 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00057 Gabi-Chr3462 692909 698460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00057 8 178 NAC Transcription Factor Family AT1G28470 61.628 2.22e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3462g00057 NAM 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00057 - - gmx:100799488 664.84