Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00056 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATCGCAACCAAAATAAAGAGTGCATCAGGAGCATGTGATCCTGAAAAAGTTATATGGAAAAGCAATCCCTCCAAGGCTTGCCCAAATTGTCAATATGCTATGGATAACAGTGATGTGACACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGACCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAAATTCAAAACCTCATCCTTTCATTGACGAGTTTATCACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAAAATTTACCTGGTGTCAAGCGAGATGGAAGTGCTTCTCACTTCTTCCACAGAGCAATCAAGGCTTATAATACTGGCACTCGAAAGCGCCGGAAAATACAAGGTCAGGATGTGGGTGATGTCCGCTGGCACAAGACTGGCAAGACTAAACCAGTCATCTTGAATGGGGTTCAAAAAGGCTGCAAAAAGATTATGGTTCTGTATATGAGCCCTGTAACAGGAGGAAAAACTGAGAAAACTAATTGGGTTATGCATCAATATCACCTCGGAACAGATGAAGATGAAAAGGATGGTGAGTATGTTATCTCTAAAGTGTTTTATCAGCAACAGCAAGTCAAATTGGGTGATAAAGATGACCAGGATGTTGCTGAAGCCATTGAAACGACTGAAGCAACAATTGTGAAAGTGGATCCAGTCACTCCCAAATTAGTGACCCCTCAGCCTCCTTATAATGAAAGGCGATGTTCAGCTCTAGACTTAGGACAGGAAACACATACCATTCCTCAGAAGCTGCCTCAGATGGAGTGTTTAGATGAAATTCGAGCCGATTGCGAAGAACTTGCAAAAACTGATGCATCCGTGGTAGAAACTCAACATGATGAAGGGATGGATAATAAAGAAAATAATGGTGACGAAGGACAAAAATGGTGGGATAGTGAGTCTCAGAATCTGTTGGATTCACAACAACTGGTCGAAGCATTGTCCTTGTGTGATGATCTACTTCAAAGCCAGTCTCCCAATAGGGATGGGAAAGATGGAGAACATATGAACCAACCCAGTCTTTCTGTTTATGCTCAGCTAGGACCAGAGCATCTGAAGAAAGACATTGAAGAGTGCCAAAATCTTGTCCTTGATCCTGCAAATGTAGATCATGATACACCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCGCAGGATAGCTTTGTTTCCTGGGGTTTCAACAAGGCAGTAAACTAA 1287 0.4219 MAGPSWLVDKSRIATKIKSASGACDPEKVIWKSNPSKACPNCQYAMDNSDVTQEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNSKPHPFIDEFITTLEVDDGICYTHPQNLPGVKRDGSASHFFHRAIKAYNTGTRKRRKIQGQDVGDVRWHKTGKTKPVILNGVQKGCKKIMVLYMSPVTGGKTEKTNWVMHQYHLGTDEDEKDGEYVISKVFYQQQQVKLGDKDDQDVAEAIETTEATIVKVDPVTPKLVTPQPPYNERRCSALDLGQETHTIPQKLPQMECLDEIRADCEELAKTDASVVETQHDEGMDNKENNGDEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDGKDGEHMNQPSLSVYAQLGPEHLKKDIEECQNLVLDPANVDHDTPSEFRLSQLEFGSQDSFVSWGFNKAVN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00056 428 MobiDBLite consensus disorder prediction 303 322 - -
Gabi3462g00056 428 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Gabi3462g00056 428 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Gabi3462g00056 428 FunFam NAC domain-containing protein 8 67 220 - -
Gabi3462g00056 428 MobiDBLite consensus disorder prediction 303 324 - -
Gabi3462g00056 428 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Gabi3462g00056 428 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Gabi3462g00056 428 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 388 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00056 Gabi-Chr3462 692908 698605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00056 14 223 NAC Transcription Factor Family AT1G28470 52.968 1.12e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3462g00056 NAM 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00056 - - gmx:100799488 747.273