Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00054 ATGGCCACTGTTGCAACTAGAGGAATTGGAGTAGGAGTGACAAAGCTCCAACACCACAAACCTAAGCAAAAGTCACTGTTTTTTGGCCATAGACTTAGAATTAGACCCTGTGTTGAGCCACAATGCAGTGCAAGGTTCACTGTCTCAAACCCAAAATTGTTTCAAGTTTTTGCACTAGGGGGTGAGTGGGTTGAATCAATTCACAACCTTTTTGTTGGTGTTGGTGTTGGGCTTCCATGCACTGTGATGGAGTGTGGAGATATGATCTACAGGAGCACTCTTCCTAAATCAAGTGGCTTAACAATCACTGCCCCTGGGGTGGTTCTGGCTTTGGGTGCTCTCTCTTACCTTTGGGCTACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTTTTCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAGAAAGGATGATTTTGTTCTGGGGAAGAAGTTGGGGGAGGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAGCCCTCTTCAAAGGAAGGTGACTTGGTTTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATCTGGATGAATGAGCGCGTGCGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGCTCGACAAAGAAAGCTCCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACCTGGTGCAGAGTAGAGAGTTTCCATACAATGTTGAAACATTGATTCTGGGTGAGGTCCAAGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATAATTCAAACAATCGTGAGGCAGATCTTGTTTGCATTGGATAGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCGCAAAACATTATTTTCTCTGAAGGTTCTCGTACATTCAAAATCATTGATCTCGGAGCTGCTACAGACCTACGAGTTGGCATCAACTATATTCCTAAGGAGTTTCTTTTGGATCCAAGGTATGCTGCACCAGAGCAGTACATCATGAGCACGCAAACTCCATCTGCACCCTCAGCTCCGGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAATTTGCCTGACAGATTTGATATCTATAGTGCTGGCCTAATCTTTCTTCAAATGGCATTCCCTGGTTTACGCACTGATAATAGCCTCATACAATTCAAACGTCAATTAAAAAGGTGTGACTATGATTTGGTTGCATGGAGAAAAAGTGTAGAGCCTCGATGCGGCCCTGAACTCAGGAGGGGCTTTGAGCTGTTGGATTTAGATGGTGGAATCGGATGGGAACTTCTGACATCAATGGTACGATACAAAGCAAGGCAAAGGCTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTCGATAGAGAAGGCCTGTTGGCATTGTCTTTCATGCAAAATCTGAGGCTGCAGCTCTTGCGCGCAACTCAACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTCATGGCAAAATCAGGAACACAGAAGGATGGTGGATTTACTGAAGCTCAGCTCCAGGAACTGAGAGAAATTGAACCCAAGAAGGCTAATGTACAGAGAAATGCTCTAGCTTCAGCACTTAAACTTCAGAGGAAAATTATAAGAACCATAAATGAGAGTATGGATGAGCTGAACAGACGCAAGAAAAGAATTTGGTGGAGCAGATGGATTCCGAGAGAGGAATGA 1731 0.4443 MATVATRGIGVGVTKLQHHKPKQKSLFFGHRLRIRPCVEPQCSARFTVSNPKLFQVFALGGEWVESIHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLTITAPGVVLALGALSYLWATPGVAPGFFDMFFLAFVERLFRPTYRKDDFVLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSTKKAPEYWLIWRFEGDATLADLVQSREFPYNVETLILGEVQDLPKGLERENRIIQTIVRQILFALDSLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFKRQLKRCDYDLVAWRKSVEPRCGPELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWIIQLMAKSGTQKDGGFTEAQLQELREIEPKKANVQRNALASALKLQRKIIRTINESMDELNRRKKRIWWSRWIPREE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00054 576 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 61 551 - -
Gabi3462g00054 576 Pfam Protein kinase domain 151 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00054 576 SUPERFAMILY Protein kinase-like (PK-like) 134 469 IPR011009 -
Gabi3462g00054 576 Gene3D Transferase(Phosphotransferase) domain 1 258 471 - -
Gabi3462g00054 576 ProSitePatterns Protein kinases ATP-binding region signature. 155 182 IPR017441 GO:0005524
Gabi3462g00054 576 CDD STKc_SNT7_plant 153 467 - -
Gabi3462g00054 576 ProSiteProfiles Protein kinase domain profile. 149 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00054 576 SMART serkin_6 149 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00054 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Gabi3462g00054 576 FunFam Serine/threonine-protein kinase STN7, chloroplastic 258 472 - -
Gabi3462g00054 576 Gene3D Phosphorylase Kinase; domain 1 136 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00054 Gabi-Chr3462 671835 675781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00054 267 468 Core Cell Cycle Gene Families AT2G38620 30.986 6.59e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gabi3462g00054 Pkinase 1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00054 - - gmx:100778588 990.334