Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00050 ATGGATGGAGGTAGTTACATAGCTGAAAGCACCACAACTGAATCACTCTCTATTACCCTATCTCCGGCGACGGCCACGTCAAAGAAGCTTTCGCCACCGCCGCCGGTGAATAGTCTCTGCCGCGTCGGCAGCGGCGCAAGCGCGATCGTTGACCCTGACGGCGGCGGATGCGGCGGCGCTGAAGCCGAATCCCGGAAGCTTCCGTCGTCGAAGTACAAAGGCGTGGTGCCGCAACCGAACGGACGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCGGCGCAGCGGTTCCGCGGCAAGGACGCTGTAACAAACTTCAAGCCACTCGGCGGTGGCGCCGCCGCCGATGACGACGACGACGTCGAGGCCGATTTCCTCAACTCGCATTCGAAATCCGAGATCGTCGACATGTTAAGGAAGCACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGATTCGTCGGCCGGAGACTCAGGTGCGTCGGAAACGCCGCCGGTAACGGTCCGTTGTTTGGCGCGTGTGGCGGGAAGGCGCGTGAGGTTCTGTTCGAGAAGGCCGTTACGCCCAGCGACGTCGGGAAGTTGAATCGGTTAGTTATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTACAGAGCGGAGTTAGTTGCGGTAGCGCGTCCGCGTCAGCGTCGGCGTCGGCGGCGAAAGGAGTTTTGTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTCACAAAGGGTTGGAGCCGGTTCGTTAAGGAGAAGAACCTAAAAGCCGGTGACACGGTTTGTTTCCACAAGTCGACCGGACCGGATAAGCAGCTCTATATAGACTGGAAAGTCAGGAATAATGTTAATGAGGTTGGATTGTTCAACCCGGTTGGACCGGTTGTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGGGTGAACATTTTGAAACTACCCGGGTCTGATGCTAATCCTAATGCTAATGCTAATAATAATGCTACTACTATTGGTGGGTGTTGCAATGGCAAGAGGAGAGAGATGGAACTGTTTACGTTAGAGTGTAGCAAAAAACCTAAGATCATTGGAGCTTTGTAA 1194 0.5586 MDGGSYIAESTTTESLSITLSPATATSKKLSPPPPVNSLCRVGSGASAIVDPDGGGCGGAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLGGGAAADDDDDVEADFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFVGRRLRCVGNAAGNGPLFGACGGKAREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGVSCGSASASASASAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHKSTGPDKQLYIDWKVRNNVNEVGLFNPVGPVVEPVQMVRLFGVNILKLPGSDANPNANANNNATTIGGCCNGKRREMELFTLECSKKPKIIGAL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00050 397 SUPERFAMILY DNA-binding domain 70 126 IPR016177 GO:0003677
Gabi3462g00050 397 Gene3D AP2/ERF domain 70 127 IPR036955 GO:0003700|GO:0006355
Gabi3462g00050 397 SMART B3_2 205 320 IPR003340 GO:0003677
Gabi3462g00050 397 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Gabi3462g00050 397 CDD B3_DNA 204 305 IPR003340 GO:0003677
Gabi3462g00050 397 Gene3D - 195 326 IPR015300 -
Gabi3462g00050 397 ProSiteProfiles AP2/ERF domain profile. 71 126 IPR001471 GO:0003700|GO:0006355
Gabi3462g00050 397 SUPERFAMILY DNA-binding pseudobarrel domain 203 306 IPR015300 -
Gabi3462g00050 397 Pfam B3 DNA binding domain 205 315 IPR003340 GO:0003677
Gabi3462g00050 397 SMART rav1_2 71 132 IPR001471 GO:0003700|GO:0006355
Gabi3462g00050 397 FunFam AP2 domain-containing protein RAP2.8 70 127 - -
Gabi3462g00050 397 CDD AP2 70 125 IPR001471 GO:0003700|GO:0006355
Gabi3462g00050 397 ProSiteProfiles B3 DNA-binding domain profile. 205 320 IPR003340 GO:0003677
Gabi3462g00050 397 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 363 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00050 Gabi-Chr3462 591558 593428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00050 10 397 B3 DNA Binding Superfamily AT1G25560 58.942 2.83e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Gabi3462g00050 B3 1.7e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00050 K09287 - gmx:100801107 592.808