Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00045 ATGCAAACTCACTCTTTCTCCTCATACATATCCTCTTGTGAGAGTAGTGCCTTCTTAGAACATGATGACGAGGTTGTTGATGAAGCCTCCATTTCACTCTCCCTTGGCCTTCCTGGCCAATACAACAACCCCAAAGTCCCTTCCTCAAATAACCACTCTGCTACTACTCTGCATCATCATCATCATCATCATAGACAGCAACAAAACCCTACCTCTGATGAACAACAGAGTGGTGTAACAGTTGCACTTCACATTGGCCTTCCCACAACTTCATCACCAAACACCACCCCTACTAGCAAACCGGATCATTTGGCTTCTGCTCCGGTTCAGGGTCAATATTGGATCCCTTCTCCTGCTCAAATACTCATTGGACCAACACAGTTCTCTTGCACAGTCTGCAAAAAAATGTTCAATCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGGAAAGGACCTGAATCATTGAGAGGAGCAAAACCAGCTTCTTCAATGTTGAGGCTTCCCTGTTATTGTTGTGCTGAGGGTTGCAAGAACAACATAGATCATCCAAGGTCAAGGCCACTCAAGGATTTCAGGACCCTTCAAACACACTACAAAAGGAAGCATGGAGCGAAGCCATTTGGGTGCAGAAAGTGTGGGAAGCCATTTGCAGTGAGAGGTGATTGGAGGACACACGAGAAAAATTGTGGGAAGCTTTGGTTCTGCATTTGTGGTTCTGATTTCAAGCACAAGAGGTCCCTTAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGCTCCACACACTGTGGAGAGTTAA 816 0.4571 MQTHSFSSYISSCESSAFLEHDDEVVDEASISLSLGLPGQYNNPKVPSSNNHSATTLHHHHHHHRQQQNPTSDEQQSGVTVALHIGLPTTSSPNTTPTSKPDHLASAPVQGQYWIPSPAQILIGPTQFSCTVCKKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVES 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00045 271 SUPERFAMILY beta-beta-alpha zinc fingers 198 233 IPR036236 -
Gabi3462g00045 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Gabi3462g00045 271 FunFam Zinc finger protein WIP2 182 264 - -
Gabi3462g00045 271 PANTHER ZINC FINGER PROTEIN WIP2 22 268 IPR043584 GO:0003700|GO:0010468
Gabi3462g00045 271 MobiDBLite consensus disorder prediction 40 78 - -
Gabi3462g00045 271 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Gabi3462g00045 271 SUPERFAMILY beta-beta-alpha zinc fingers 108 149 IPR036236 -
Gabi3462g00045 271 MobiDBLite consensus disorder prediction 40 54 - -
Gabi3462g00045 271 MobiDBLite consensus disorder prediction 86 105 - -
Gabi3462g00045 271 Gene3D Classic Zinc Finger 171 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00045 Gabi-Chr3462 551372 552613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00045 27 269 C2H2 Transcription Factor Family AT1G13290 70.492 1.23e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3462g00045 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00045 - - aprc:113870355 467.233