Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00044 ATGCAATTCGCCGAAAAAATGCAACCCCATAAGATGGAATTCCGTGACTACATCGAAGCATTGGAGGAAGAAAGAAGAAAAATTCAGGTTTTCCCCAGAGAACTTCCTCTGTCATTGGAGCTTGTCACGCAAGCCATTGAAGCATGTAGGCAACAGTTGTCAGGAACGACGACGGAGTGCAATTTGTATGGCCAATCGGAGTGTTCGGAGCAGACATCAATGGAAGAAGGCCCAGTTTTTGAGGAGTTCATTCCTATGAAGAAAATAGCATCCCCTGAAGAAGAAGAAGAAGAAGATGATGATGATGTTGTTGATGATGATGACCAACATTCTCATAAGAATAAGAGCATGAACATCACTGATAAAAAGAAATCGGATTGGCTCAGATCTGTTCAGTTGTGGCATCATGATCCCACTCCTGCTAAAGAGGATGTGCCTAGAAAAACAAATGTTGTGGAAGTGAAGAGAAATGGTGGTGCTTTCCAACCATTCCACAAAGAGGAAAGTACTAATGGAAAGGCTAATATATCACCAGCTGTTAAAGCACCCTCTTCACCACCAGTACCTGCTACAAGTTCAACAGGACCAGTCAGAGTAGAAAATGCTGTGAGCAACAAAAGAGAGGAGAAAGGACAGAATCAGAGAAAGCAGCGCCGGTGTTGGTCACAGGAATTGCACAAGCGCTTCTTGCATGCCCTTCAGCAACTTGGCGGTGCAGATTCTGCCACACCTAAACAGATCAGGGATCAAATGAAGGTTGATGGTCTCACCAATGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACCAGAAGGAGCCCCATTATGCACAATAATGGTAATTCACCAACAGCTCCTTTGTTCCTTGTTGGGAACATTTTTGTTCAACCACCAGAATATGCTCCCATGGCAACCTCAACAGCATCAGGGGAATTGACCACAGTTACTGCTTCTACTGGAATTTATGCTCCTGTGGCTTCACATCCTCCAGCTGTTACACACACATCAACTCCTCCTTCAATTAAGAAGGCACAGTTTAAACAATTAGAGGTGTCTGAGCATTCACATTCAGGAGAAAGGGCTAATCACAGTGAAGGGGCTGTTAATTCAAACTCCCCTACCTCATCATCCTCCACTCAGACCACCACAACTTCACCTGGCTGTTGA 1173 0.4433 MQFAEKMQPHKMEFRDYIEALEEERRKIQVFPRELPLSLELVTQAIEACRQQLSGTTTECNLYGQSECSEQTSMEEGPVFEEFIPMKKIASPEEEEEEDDDDVVDDDDQHSHKNKSMNITDKKKSDWLRSVQLWHHDPTPAKEDVPRKTNVVEVKRNGGAFQPFHKEESTNGKANISPAVKAPSSPPVPATSSTGPVRVENAVSNKREEKGQNQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRDQMKVDGLTNDEVKSHLQKFRLHTRRSPIMHNNGNSPTAPLFLVGNIFVQPPEYAPMATSTASGELTTVTASTGIYAPVASHPPAVTHTSTPPSIKKAQFKQLEVSEHSHSGERANHSEGAVNSNSPTSSSSTQTTTTSPGC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00044 390 Gene3D - 215 273 - -
Gabi3462g00044 390 MobiDBLite consensus disorder prediction 186 200 - -
Gabi3462g00044 390 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
Gabi3462g00044 390 Coils Coil 199 219 - -
Gabi3462g00044 390 MobiDBLite consensus disorder prediction 157 220 - -
Gabi3462g00044 390 MobiDBLite consensus disorder prediction 364 390 - -
Gabi3462g00044 390 MobiDBLite consensus disorder prediction 346 390 - -
Gabi3462g00044 390 MobiDBLite consensus disorder prediction 349 363 - -
Gabi3462g00044 390 FunFam Myb family transcription factor 215 273 - -
Gabi3462g00044 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 271 IPR006447 GO:0003677
Gabi3462g00044 390 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 344 IPR044787 GO:0003700|GO:0006355
Gabi3462g00044 390 MobiDBLite consensus disorder prediction 91 119 - -
Gabi3462g00044 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 273 IPR017930 -
Gabi3462g00044 390 MobiDBLite consensus disorder prediction 202 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00044 Gabi-Chr3462 514933 517114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00044 1 388 G2-like Transcription Factor Family AT1G68670 46.420 7.89e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3462g00044 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00044 - - gmx:100819750 484.952