Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00022 ATGGCCACCGACTACGGCCATGATTCCCGTTGCAAGCACCGTCGGTCTTCCTCTCCGGAGGACGCCGACAGATCCTCGAAGCGCCACCGCCACCACCACGGTCATGGAAGCAGAAGACGCGACGAAGACAGCGAATGCGATGGCGAAACCGTTCCGGTGGTTCCTTCTGCGACTCCCGCCTCGAATTCTTTCCCGAATCGTCACGTGCCCGTTGACGATGATATCGAGGAGGGGGAGATTATCGAAGAAGATGATTGTGATGTTTGGAAACAGCGGAAGGAATCTGATGCTGAGCCTGGTGATGTTGAGGTGATCGGAGATCGAGATGTTGGATCTGATACCGCAATTCTGAGATTTTTCACCAGAGAGACTGTGTTGCATGCTAAAAATTCAAAAACTAGTCCAGCATTTGATGGAACAGATGGGACATGCCTTCAAAGTCACGTTGACGAAGGAATAGATGAAGATGATGGTTCTCCTAATTATTCAAGTGCTGACTCTCAAGATGGAAAGTATGCTAGAGCTAGAATAGATGGTATGAGCAATGGGCATTTGGATTCTAAATCTCCTAAAGGGGATAAGAGGCATCGTGGAGAACTTGGATGTTTTAAAGGATATGAGAAACTAAAAGGTGATTATGATGGCAAAGATGTAGAAGTTAATAGAGGGAAAGTAGATTATCATAGAAATTCTTCCTCAGAAAGTGGGGAGGAGAAATATAGAATGTCGGGACGTTCACCTTCTCATGTTAGATATAGAAGTCAATCAAGATCAAATGGTTATATCAGGGACAGATCTCGTTCTCGTAGTATAGTAGAAGAATATGCCTGTTCCCAGAGAAGGCTCTCTGATGAACTAGGTGGCCTTTCATTTGCTGGCAGACCAAAGAGTGACTATGATGTTGATGATGAAAGAATGGTGGCAAGAAGATGGGAGCATAGTCATGGCAGTAGGGATTTGGTCATGGACGAGAGAATGGAACACAGAGCAAGTCGTCACATTCGGGAGCCCTGGGATAGGGATAGGAGTAAGGAAAGACATGCTGATAGGGCCTTACCTAGGGAAAAGGAACGAGAGAGGGGCAAAAATAGGGAGGTTGACTGGGTGTGTACAAGGGAAAAAGATTGTGAAAGGAGCCATGAGAGGCATGGAAGGGATATAGAGTATGATAAGAGTGGGGAAAAGGAGGATAATAGGGATAGGAGAAGAGAAAAGGAAAGAGATAGGAGCTGGGAAACAGTGTTGGAGAGGGATAGGAGAAGGGAGATGGAAAGAGATAAAAGTAGGGACAGAAAAAGGGGTTCTGAGAGAGATAGAGACTGGGAGAGTGAGCGTGATGATAAGACTTGGTTGAGGGCTAAAATTAAGCGGAGGGGGAGGGTGGGGGAGAGGGAGAGGCGAGATGATAGAAATAGGCACAAGCATAGAGACACTGTGAATGGTAAGGATAAGTATCTGCATCATGAGGATGGTTATGACAGTTGTGATAAATATAAAATGCATTCAAGACATGAAGATATAGAATACCACCGGGAAAGAAAAAGAAATTCTGATGCTGTAAAGGCTTACAGCACTATTGGCAGTACCTTGGTAGATGATAAAAACAAACTAGGGAGAGGCGAGGATGAACAAGATTACTTAAATGAGAAGTTTGCATTGCAATTACCTGATCAAGAAGAGGAAGATCTCAATAGGGTCAAAGAGGAGAGTAGAAGGAGAAGGGAATCAATCTTAGAGAAATACAAGAAGCAGCAGCAGCAAGAAGTAAAACAAACTGCAGAAAATGAAGAAAAAGACAAGCAAGTTGTGGATATTCCTCATGTCATTCATGAAGCTTTTGATGGTAAGAGCAATGGTGTTGATGATGGGGAAACGTCATTTTCTGTTGGGAAGTCTCCTCCAGAAAATGGGAATGTTGCTTCCGATAAGATCTCTGTTTCTAGGGGCCTGGGAGAGGGTACGCCTAAGAGTGAGAGATCAGATGACAAGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAACATGGGAAAAGGAGATGGTATACAGATTGAGAGGGGTGGTCTACATGACAATTGGGATGATGCAGAGGGTTATTATAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTCACCGCTGCTCATGGGAGGGGTGTCTTTTCAACAGTAGTCCGGGCAAAGAATCTTAAAGCTGGTAACGGAGAGCCCGAGGATGTAGCTATAAAAATTATTCGTAATAATGACACTATGTACAAGGCTGGTATGAATGAGTTAGTCATATTAAAGAAATTAAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGAGCATATGCAAAACAACAACTTATTGCACTGAAGCATCTCCGGAACTGTGGTGTTCTCCATTGTGATATAAAACCAGATAATATGTTGGTGAATGAGGCTAAAAATGTGTTGAAGCTTTGTGACTTTGGTAATGCTATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATACTTGGCTTGCCCTACGATCATCCATTGGATATGTGGTCTGTAGGTTGTTGTTTGTTTGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTCTACAAATAATAACATGCTACGGCTTCACATGGAATTGAAGGGTCCTTTTCCGAAGAAGATGCTACGTAAGGGAGCATTCATTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACAGAGGAGGACCCTGTAACGAGAAAGACCATAAAGCGGATGATTGTCAACTTAAAGCCAAAAGATTTTGGTACAATCATTACTGGCTCCCCAGGGGAGGATCCAAAGATTTTAGCCAACTTTAAGGATCTTCTCGAAAAAGTTTTTGTGTTGGATCCAGACAAGAGGTTGACGGTCTCACAAGCATTGAATCACCCATTCATCACTGGCAAGTGA 2982 0.4333 MATDYGHDSRCKHRRSSSPEDADRSSKRHRHHHGHGSRRRDEDSECDGETVPVVPSATPASNSFPNRHVPVDDDIEEGEIIEEDDCDVWKQRKESDAEPGDVEVIGDRDVGSDTAILRFFTRETVLHAKNSKTSPAFDGTDGTCLQSHVDEGIDEDDGSPNYSSADSQDGKYARARIDGMSNGHLDSKSPKGDKRHRGELGCFKGYEKLKGDYDGKDVEVNRGKVDYHRNSSSESGEEKYRMSGRSPSHVRYRSQSRSNGYIRDRSRSRSIVEEYACSQRRLSDELGGLSFAGRPKSDYDVDDERMVARRWEHSHGSRDLVMDERMEHRASRHIREPWDRDRSKERHADRALPREKERERGKNREVDWVCTREKDCERSHERHGRDIEYDKSGEKEDNRDRRREKERDRSWETVLERDRRREMERDKSRDRKRGSERDRDWESERDDKTWLRAKIKRRGRVGERERRDDRNRHKHRDTVNGKDKYLHHEDGYDSCDKYKMHSRHEDIEYHRERKRNSDAVKAYSTIGSTLVDDKNKLGRGEDEQDYLNEKFALQLPDQEEEDLNRVKEESRRRRESILEKYKKQQQQEVKQTAENEEKDKQVVDIPHVIHEAFDGKSNGVDDGETSFSVGKSPPENGNVASDKISVSRGLGEGTPKSERSDDKFCDDIFGETPTGVRNMGKGDGIQIERGGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKAGNGEPEDVAIKIIRNNDTMYKAGMNELVILKKLKFGRNIGLRLTAVRAYAKQQLIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDMWSVGCCLFELYTGKVLFPGSTNNNMLRLHMELKGPFPKKMLRKGAFIEQHFDQDLNFLATEEDPVTRKTIKRMIVNLKPKDFGTIITGSPGEDPKILANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 213 268 - -
Gabi3462g00022 993 Pfam Protein kinase domain 781 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00022 993 FunFam serine/threonine-protein kinase PRP4 homolog 685 773 - -
Gabi3462g00022 993 Gene3D Phosphorylase Kinase; domain 1 685 771 - -
Gabi3462g00022 993 Gene3D Transferase(Phosphotransferase) domain 1 774 990 - -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 579 598 - -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 1 83 - -
Gabi3462g00022 993 FunFam Serine/threonine-protein kinase PRP4 homolog 757 991 - -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 313 445 - -
Gabi3462g00022 993 PANTHER DUAL SPECIFICITY PROTEIN KINASE 431 771 - -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 131 199 - -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 621 643 - -
Gabi3462g00022 993 SUPERFAMILY Protein kinase-like (PK-like) 702 992 IPR011009 -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 457 496 - -
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 613 665 - -
Gabi3462g00022 993 SMART serkin_6 715 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00022 993 ProSiteProfiles Protein kinase domain profile. 715 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00022 993 MobiDBLite consensus disorder prediction 213 245 - -
Gabi3462g00022 993 Coils Coil 567 587 - -
Gabi3462g00022 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00022 Gabi-Chr3462 239374 252359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00022 784 992 MAP Kinase Gene Family AT2G18170 35.211 3.09e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gabi3462g00022 Pkinase 4.7e-36 CL0016