Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00021 ATGGCCACCGACTACGGCCATGATTCCCGTTGCAAGCACCGTCGGTCTTCCTCTCCGGAGGACGCCGACAGATCCTCGAAGCGCCACCGCCACCACCACGGTCATGGAAGCAGAAGACGCGACGAAGACAGCGAATGCGATGGCGAAACCGTTCCGGTGGTTCCTTCTGCGACTCCCGCCTCGAATTCTTTCCCGAATCGTCACGTGCCCGTTGACGATGATATCGAGGAGGGGGAGATTATCGAAGAAGATGATTGTGATGTTTGGAAACAGCGGAAGGAATCTGATGCTGAGCCTGGTGATGTTGAGGTGATCGGAGATCGAGATGTTGGATCTGATACCGCAATTCTGAGATTTTTCACCAGAGAGACTGTGTTGCATGCTAAAAATTCAAAAACTAGTCCAGCATTTGATGGAACAGATGGGACATGCCTTCAAAGTCACGTTGACGAAGGAATAGATGAAGATGATGGTTCTCCTAATTATTCAAGTGCTGACTCTCAAGATGGAAAGTATGCTAGAGCTAGAATAGATGGTATGAGCAATGGGCATTTGGATTCTAAATCTCCTAAAGGGGATAAGAGGCATCGTGGAGAACTTGGATGTTTTAAAGGATATGAGAAACTAAAAGGTGATTATGATGGCAAAGATGTAGAAGTTAATAGAGGGAAAGTAGATTATCATAGAAATTCTTCCTCAGAAAGTGGGGAGGAGAAATATAGAATGTCGGGACGTTCACCTTCTCATGTTAGATATAGAAGTCAATCAAGATCAAATGGTTATATCAGGGACAGATCTCGTTCTCGTAGTATAGTAGAAGAATATGCCTGTTCCCAGAGAAGGCTCTCTGATGAACTAGGTGGCCTTTCATTTGCTGGCAGACCAAAGAGTGACTATGATGTTGATGATGAAAGAATGGTGGCAAGAAGATGGGAGCATAGTCATGGCAGTAGGGATTTGGTCATGGACGAGAGAATGGAACACAGAGCAAGTCGTCACATTCGGGAGCCCTGGGATAGGGATAGGAGTAAGGAAAGACATGCTGATAGGGCCTTACCTAGGGAAAAGGAACGAGAGAGGGGCAAAAATAGGGAGGTTGACTGGGTGTGTACAAGGGAAAAAGATTGTGAAAGGAGCCATGAGAGGCATGGAAGGGATATAGAGTATGATAAGAGTGGGGAAAAGGAGGATAATAGGGATAGGAGAAGAGAAAAGGAAAGAGATAGGAGCTGGGAAACAGTGTTGGAGAGGGATAGGAGAAGGGAGATGGAAAGAGATAAAAGTAGGGACAGAAAAAGGGGTTCTGAGAGAGATAGAGACTGGGAGAGTGAGCGTGATGATAAGACTTGGTTGAGGGCTAAAATTAAGCGGAGGGGGAGGGTGGGGGAGAGGGAGAGGCGAGATGATAGAAATAGGCACAAGCATAGAGACACTGTGAATGGTAAGGATAAGTATCTGCATCATGAGGATGGTTATGACAGTTGTGATAAATATAAAATGCATTCAAGACATGAAGATATAGAATACCACCGGGAAAGAAAAAGAAATTCTGATGCTGTAAAGGCTTACAGCACTATTGGCAGTACCTTGGTAGATGATAAAAACAAACTAGGGAGAGGCGAGGATGAACAAGATTACTTAAATGAGAAGTTTGCATTGCAATTACCTGATCAAGAAGAGGAAGATCTCAATAGGGTCAAAGAGGAGAGTAGAAGGAGAAGGGAATCAATCTTAGAGAAATACAAGAAGCAGCAGCAGCAAGAAGTAAAACAAACTGCAGAAAATGAAGAAAAAGACAAGCAAGTTGTGGATATTCCTCATGTCATTCATGAAGCTTTTGATGGTAAGAGCAATGGTGTTGATGATGGGGAAACGTCATTTTCTGTTGGGAAGTCTCCTCCAGAAAATGGGAATGTTGCTTCCGATAAGATCTCTGTTTCTAGGGGCCTGGGAGAGGGTACGCCTAAGAGTGAGAGATCAGATGACAAGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAACATGGGAAAAGGAGATGGTATACAGATTGAGAGGGGTGGTCTACATGACAATTGGGATGATGCAGAGGGTTATTATAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTCACCGCTGCTCATGGGAGGGGTGTCTTTTCAACAGTAGTCCGGGCAAAGAATCTTAAAGCTGGTAACGGAGAGCCCGAGGATGTAGCTATAAAAATTATTCGTAATAATGACACTATGTACAAGGCTGGTATGAATGAGTTAGTCATATTAAAGAAATTAGTAGGTGCTGATCCAGATGATAAGCACCATTGTGTTCGTTTCCTTTCAAGTTTTAAGCTAACTGCTGTGAGAGCATATGCAAAACAACAACTTATTGCACTGAAGCATCTCCGGAACTGTGGTGTTCTCCATTGTGATATAAAACCAGATAATATGTTGGTGAATGAGGCTAAAAATGTGTTGAAGCTTTGTGACTTTGGTAATGCTATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATACTTGGCTTGCCCTACGATCATCCATTGGATATGTGGTCTGTAGGTTGTTGTTTGTTTGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTCTACAAATAATAACATGCTACGGCTTCACATGGAATTGAAGGGTCCTTTTCCGAAGAAGATGCTACGTAAGGGAGCATTCATTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACAGAGGAGGACCCTGTAACGAGAAAGACCATAAAGCGGATGATTGTCAACTTAAAGCCAAAAGATTTTGGTACAATCATTACTGGCTCCCCAGGGGAGGATCCAAAGATTTTAGCCAACTTTAAGGATCTTCTCGAAAAAGTTTTTGTGTTGGATCCAGACAAGAGGTTGACGGTCTCACAAGCATTGAATCACCCATTCATCACTGGCAAGTGA 3012 0.4326 MATDYGHDSRCKHRRSSSPEDADRSSKRHRHHHGHGSRRRDEDSECDGETVPVVPSATPASNSFPNRHVPVDDDIEEGEIIEEDDCDVWKQRKESDAEPGDVEVIGDRDVGSDTAILRFFTRETVLHAKNSKTSPAFDGTDGTCLQSHVDEGIDEDDGSPNYSSADSQDGKYARARIDGMSNGHLDSKSPKGDKRHRGELGCFKGYEKLKGDYDGKDVEVNRGKVDYHRNSSSESGEEKYRMSGRSPSHVRYRSQSRSNGYIRDRSRSRSIVEEYACSQRRLSDELGGLSFAGRPKSDYDVDDERMVARRWEHSHGSRDLVMDERMEHRASRHIREPWDRDRSKERHADRALPREKERERGKNREVDWVCTREKDCERSHERHGRDIEYDKSGEKEDNRDRRREKERDRSWETVLERDRRREMERDKSRDRKRGSERDRDWESERDDKTWLRAKIKRRGRVGERERRDDRNRHKHRDTVNGKDKYLHHEDGYDSCDKYKMHSRHEDIEYHRERKRNSDAVKAYSTIGSTLVDDKNKLGRGEDEQDYLNEKFALQLPDQEEEDLNRVKEESRRRRESILEKYKKQQQQEVKQTAENEEKDKQVVDIPHVIHEAFDGKSNGVDDGETSFSVGKSPPENGNVASDKISVSRGLGEGTPKSERSDDKFCDDIFGETPTGVRNMGKGDGIQIERGGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKAGNGEPEDVAIKIIRNNDTMYKAGMNELVILKKLVGADPDDKHHCVRFLSSFKLTAVRAYAKQQLIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDMWSVGCCLFELYTGKVLFPGSTNNNMLRLHMELKGPFPKKMLRKGAFIEQHFDQDLNFLATEEDPVTRKTIKRMIVNLKPKDFGTIITGSPGEDPKILANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 213 268 - -
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 1 84 - -
Gabi3462g00021 1003 ProSiteProfiles Protein kinase domain profile. 715 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 579 598 - -
Gabi3462g00021 1003 FunFam serine/threonine-protein kinase PRP4 homolog 685 774 - -
Gabi3462g00021 1003 FunFam Serine/threonine-protein kinase PRP4 homolog 786 1001 - -
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 313 445 - -
Gabi3462g00021 1003 CDD STKc_PRP4 714 1000 IPR044092 GO:0004674|GO:0006468|GO:0045292
Gabi3462g00021 1003 Gene3D Transferase(Phosphotransferase) domain 1 779 1001 - -
Gabi3462g00021 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Gabi3462g00021 1003 SUPERFAMILY Protein kinase-like (PK-like) 702 1002 IPR011009 -
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 131 199 - -
Gabi3462g00021 1003 Pfam Protein kinase domain 786 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 621 643 - -
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 457 496 - -
Gabi3462g00021 1003 Gene3D Phosphorylase Kinase; domain 1 685 774 - -
Gabi3462g00021 1003 SMART serkin_6 715 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 613 665 - -
Gabi3462g00021 1003 PANTHER DUAL SPECIFICITY PROTEIN KINASE 431 789 - -
Gabi3462g00021 1003 MobiDBLite consensus disorder prediction 213 245 - -
Gabi3462g00021 1003 Coils Coil 567 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00021 Gabi-Chr3462 239374 252359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00021 777 1002 MAP Kinase Gene Family AT2G18170 33.913 2.10e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gabi3462g00021 Pkinase 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00021 K08827 - gmx:100776908 1189.87