Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00020 ATGGCCACCGACTACGGCCATGATTCCCGTTGCAAGCACCGTCGGTCTTCCTCTCCGGAGGACGCCGACAGATCCTCGAAGCGCCACCGCCACCACCACGGTCATGGAAGCAGAAGACGCGACGAAGACAGCGAATGCGATGGCGAAACCGTTCCGGTGGTTCCTTCTGCGACTCCCGCCTCGAATTCTTTCCCGAATCGTCACGTGCCCGTTGACGATGATATCGAGGAGGGGGAGATTATCGAAGAAGATGATTGTGATGTTTGGAAACAGCGGAAGGAATCTGATGCTGAGCCTGGTGATGTTGAGGTGATCGGAGATCGAGATGTTGGATCTGATACCGCAATTCTGAGATTTTTCACCAGAGAGACTGTGTTGCATGCTAAAAATTCAAAAACTAGTCCAGCATTTGATGGAACAGATGGGACATGCCTTCAAAGTCACGTTGACGAAGGAATAGATGAAGATGATGGTTCTCCTAATTATTCAAGTGCTGACTCTCAAGATGGAAAGTATGCTAGAGCTAGAATAGATGGTATGAGCAATGGGCATTTGGATTCTAAATCTCCTAAAGGGGATAAGAGGCATCGTGGAGAACTTGGATGTTTTAAAGGATATGAGAAACTAAAAGGTGATTATGATGGCAAAGATGTAGAAGTTAATAGAGGGAAAGTAGATTATCATAGAAATTCTTCCTCAGAAAGTGGGGAGGAGAAATATAGAATGTCGGGACGTTCACCTTCTCATGTTAGATATAGAAGTCAATCAAGATCAAATGGTTATATCAGGGACAGATCTCGTTCTCGTAGTATAGTAGAAGAATATGCCTGTTCCCAGAGAAGGCTCTCTGATGAACTAGGTGGCCTTTCATTTGCTGGCAGACCAAAGAGTGACTATGATGTTGATGATGAAAGAATGGTGGCAAGAAGATGGGAGCATAGTCATGGCAGTAGGGATTTGGTCATGGACGAGAGAATGGAACACAGAGCAAGTCGTCACATTCGGGAGCCCTGGGATAGGGATAGGAGTAAGGAAAGACATGCTGATAGGGCCTTACCTAGGGAAAAGGAACGAGAGAGGGGCAAAAATAGGGAGGTTGACTGGGTGTGTACAAGGGAAAAAGATTGTGAAAGGAGCCATGAGAGGCATGGAAGGGATATAGAGTATGATAAGAGTGGGGAAAAGGAGGATAATAGGGATAGGAGAAGAGAAAAGGAAAGAGATAGGAGCTGGGAAACAGTGTTGGAGAGGGATAGGAGAAGGGAGATGGAAAGAGATAAAAGTAGGGACAGAAAAAGGGGTTCTGAGAGAGATAGAGACTGGGAGAGTGAGCGTGATGATAAGACTTGGTTGAGGGCTAAAATTAAGCGGAGGGGGAGGGTGGGGGAGAGGGAGAGGCGAGATGATAGAAATAGGCACAAGCATAGAGACACTGTGAATGGTAAGGATAAGTATCTGCATCATGAGGATGGTTATGACAGTTGTGATAAATATAAAATGCATTCAAGACATGAAGATATAGAATACCACCGGGAAAGAAAAAGAAATTCTGATGCTGTAAAGGCTTACAGCACTATTGGCAGTACCTTGGTAGATGATAAAAACAAACTAGGGAGAGGCGAGGATGAACAAGATTACTTAAATGAGAAGTTTGCATTGCAATTACCTGATCAAGAAGAGGAAGATCTCAATAGGGTCAAAGAGGAGAGTAGAAGGAGAAGGGAATCAATCTTAGAGAAATACAAGAAGCAGCAGCAGCAAGAAGTAAAACAAACTGCAGAAAATGAAGAAAAAGACAAGCAAGTTGTGGATATTCCTCATGTCATTCATGAAGCTTTTGATGGTAAGAGCAATGGTGTTGATGATGGGGAAACGTCATTTTCTGTTGGGAAGTCTCCTCCAGAAAATGGGAATGTTGCTTCCGATAAGATCTCTGTTTCTAGGGGCCTGGGAGAGGGTACGCCTAAGAGTGAGAGATCAGATGACAAGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAACATGGGAAAAGGAGATGGTATACAGATTGAGAGGGGTGGTCTACATGACAATTGGGATGATGCAGAGGGTTATTATAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTCACCGCTGCTCATGGGAGGGGTGTCTTTTCAACAGTAGTCCGGGCAAAGAATCTTAAAGCTGGTAACGGAGAGCCCGAGGATGTAGCTATAAAAATTATTCGTAATAATGACACTATGTACAAGGCTGGTATGAATGAGTTAGTCATATTAAAGAAATTAGTAGGTGCTGATCCAGATGATAAGCACCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTCCATATGAATTTGCGTGAGGTTCTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGAGCATATGCAAAACAACAACTTATTGCACTGAAGCATCTCCGGAACTGTGGTGTTCTCCATTGTGATATAAAACCAGATAATATGTTGGTGAATGAGGCTAAAAATGTGTTGAAGCTTTGTGACTTTGGTAATGCTATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATACTTGGCTTGCCCTACGATCATCCATTGGATATGTGGTCTGTAGGTTGTTGTTTGTTTGAACTCTATACAGGGAAAGTTCTTTTTCCAGGTTCTACAAATAATAACATGCTACGGCTTCACATGGAATTGAAGGGTCCTTTTCCGAAGAAGATGCTACGTAAGGGAGCATTCATTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACAGAGGAGGACCCTGTAACGAGAAAGACCATAAAGCGGATGATTGTCAACTTAAAGCCAAAAGATTTTGGTACAATCATTACTGGCTCCCCAGGGGAGGATCCAAAGATTTTAGCCAACTTTAAGGATCTTCTCGAAAAAGTTTTTGTGTTGGATCCAGACAAGAGGTTGACGGTCTCACAAGCATTGAATCACCCATTCATCACTGGCAAGTGA 3102 0.431 MATDYGHDSRCKHRRSSSPEDADRSSKRHRHHHGHGSRRRDEDSECDGETVPVVPSATPASNSFPNRHVPVDDDIEEGEIIEEDDCDVWKQRKESDAEPGDVEVIGDRDVGSDTAILRFFTRETVLHAKNSKTSPAFDGTDGTCLQSHVDEGIDEDDGSPNYSSADSQDGKYARARIDGMSNGHLDSKSPKGDKRHRGELGCFKGYEKLKGDYDGKDVEVNRGKVDYHRNSSSESGEEKYRMSGRSPSHVRYRSQSRSNGYIRDRSRSRSIVEEYACSQRRLSDELGGLSFAGRPKSDYDVDDERMVARRWEHSHGSRDLVMDERMEHRASRHIREPWDRDRSKERHADRALPREKERERGKNREVDWVCTREKDCERSHERHGRDIEYDKSGEKEDNRDRRREKERDRSWETVLERDRRREMERDKSRDRKRGSERDRDWESERDDKTWLRAKIKRRGRVGERERRDDRNRHKHRDTVNGKDKYLHHEDGYDSCDKYKMHSRHEDIEYHRERKRNSDAVKAYSTIGSTLVDDKNKLGRGEDEQDYLNEKFALQLPDQEEEDLNRVKEESRRRRESILEKYKKQQQQEVKQTAENEEKDKQVVDIPHVIHEAFDGKSNGVDDGETSFSVGKSPPENGNVASDKISVSRGLGEGTPKSERSDDKFCDDIFGETPTGVRNMGKGDGIQIERGGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKAGNGEPEDVAIKIIRNNDTMYKAGMNELVILKKLVGADPDDKHHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRAYAKQQLIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDMWSVGCCLFELYTGKVLFPGSTNNNMLRLHMELKGPFPKKMLRKGAFIEQHFDQDLNFLATEEDPVTRKTIKRMIVNLKPKDFGTIITGSPGEDPKILANFKDLLEKVFVLDPDKRLTVSQALNHPFITGK 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00020 1033 PANTHER DUAL SPECIFICITY PROTEIN KINASE 431 1031 - -
Gabi3462g00020 1033 Gene3D Transferase(Phosphotransferase) domain 1 775 1031 - -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 131 199 - -
Gabi3462g00020 1033 CDD STKc_PRP4 714 1030 IPR044092 GO:0004674|GO:0006468|GO:0045292
Gabi3462g00020 1033 ProSiteProfiles Protein kinase domain profile. 715 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00020 1033 SUPERFAMILY Protein kinase-like (PK-like) 702 1032 IPR011009 -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 457 496 - -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 613 665 - -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 213 245 - -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 213 268 - -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 1 84 - -
Gabi3462g00020 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 579 598 - -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 313 445 - -
Gabi3462g00020 1033 FunFam serine/threonine-protein kinase PRP4 homolog 685 774 - -
Gabi3462g00020 1033 SMART serkin_6 715 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3462g00020 1033 MobiDBLite consensus disorder prediction 621 643 - -
Gabi3462g00020 1033 Pfam Protein kinase domain 717 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3462g00020 1033 FunFam Serine/threonine-protein kinase PRP4 homolog 775 1031 - -
Gabi3462g00020 1033 Gene3D Phosphorylase Kinase; domain 1 685 774 - -
Gabi3462g00020 1033 Coils Coil 567 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00020 Gabi-Chr3462 239374 252359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00020 711 1032 MAP Kinase Gene Family AT2G18170 32.132 9.88e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gabi3462g00020 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00020 K08827 - gmx:100776908 1264.21