Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00010 ATGAAGGTTTTCGTGAAGACTCTGAAAGGAACGCACTTTGAAATTGAAGTGAATTCCTCGGACACGCTTTCTGAAGTGAAGAAAAATATCGAAACTGTTCAGGGCGCAGATGTCTATCCTGCAGCGCAGCAAATGCTAATTCATCAAGGAAAAGTTCTCAAGGATGGCACTACATTGGAGGAAAATGAAATAAATGAAAATAGTTTTATTGTCATTATGCTATCGAAGACTAAGAGCTCTTCTGGTGAAGGATCTACTACTTCAACTGCACCTTCAACTAAGGCTACACAGACAAGTGCAGCTCCTACTCCAACCTCTGTGTCAACTGCACCTCAACCTCCTACTGCAACTGGGGAAACGCCTCCACCTATTACTGCCACAGTTCCTGCTCCTGCCCTAGCTCCGGCTCCGGCACCTGCTGCTGCTGCTGCTGCTCCTTCTCCTTCTCCTGCTCCTGCTCCTATATCTCTGGGCTCTGCAGTGCCAGGGTCCGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGTGTCAACTTGGAGGAAATAATTCAGCAAATCCTTGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTGTCCGTGCTCTTCGGGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGCATACCAGAGCAAGCTGAAGCTCAACCTGTGGCCCGAGTGCCTGCAAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTGCTCCACAAGCAGCACAACCAGCATCTGTTCCATCTAGTGGACCTAATGCTAATCCTTTAGACCTATTTCCCCAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCCGGTTCTTTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAGCAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAGTTGACTTCCTACGCCTGATAAACGAACCTGTGGAAGGTGGTGAGGGGAATATTTTGGGACAGCTGGCTGGTGCCATGCCACAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAACTGGCTGCCAACTACCTCTTAGATCACATGCATGAGTTTGATGAATAA 1239 0.4794 MKVFVKTLKGTHFEIEVNSSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENEINENSFIVIMLSKTKSSSGEGSTTSTAPSTKATQTSAAPTPTSVSTAPQPPTATGETPPPITATVPAPALAPAPAPAAAAAAPSPSPAPAPISLGSAVPGSDIYGQAASNLVAGVNLEEIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAQPVARVPASAQPANPPAAAAPQAAQPASVPSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00010 412 Gene3D - 173 223 - -
Gabi3462g00010 412 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gabi3462g00010 412 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gabi3462g00010 412 SUPERFAMILY XPC-binding domain 284 349 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi3462g00010 412 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 401 - -
Gabi3462g00010 412 MobiDBLite consensus disorder prediction 77 132 - -
Gabi3462g00010 412 CDD UBA1_Rad23_plant 174 223 - -
Gabi3462g00010 412 FunFam UV excision repair protein RAD23 B 278 343 - -
Gabi3462g00010 412 Pfam UBA/TS-N domain 368 403 IPR015940 -
Gabi3462g00010 412 Pfam UBA/TS-N domain 180 218 IPR015940 -
Gabi3462g00010 412 FunFam UV excision repair protein RAD23 homolog 173 223 - -
Gabi3462g00010 412 SUPERFAMILY UBA-like 178 230 IPR009060 GO:0005515
Gabi3462g00010 412 CDD Ubl_Rad23 1 74 - -
Gabi3462g00010 412 FunFam UV excision repair protein RAD23 1 80 - -
Gabi3462g00010 412 NCBIfam UV excision repair protein Rad23 1 411 IPR004806 GO:0006289
Gabi3462g00010 412 SMART ubq_7 1 75 IPR000626 GO:0005515
Gabi3462g00010 412 MobiDBLite consensus disorder prediction 115 132 - -
Gabi3462g00010 412 MobiDBLite consensus disorder prediction 232 269 - -
Gabi3462g00010 412 Pfam XPC-binding domain 287 342 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gabi3462g00010 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 406 IPR015940 -
Gabi3462g00010 412 SUPERFAMILY UBA-like 349 411 IPR009060 GO:0005515
Gabi3462g00010 412 Gene3D - 1 80 - -
Gabi3462g00010 412 PRINTS DNA repair protein Rad23 signature 379 393 IPR004806 GO:0006289
Gabi3462g00010 412 PRINTS DNA repair protein Rad23 signature 313 335 IPR004806 GO:0006289
Gabi3462g00010 412 PRINTS DNA repair protein Rad23 signature 394 409 IPR004806 GO:0006289
Gabi3462g00010 412 PRINTS DNA repair protein Rad23 signature 362 378 IPR004806 GO:0006289
Gabi3462g00010 412 MobiDBLite consensus disorder prediction 77 114 - -
Gabi3462g00010 412 Gene3D - 360 407 - -
Gabi3462g00010 412 Gene3D - 278 343 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi3462g00010 412 SMART CBM 285 328 IPR006636 -
Gabi3462g00010 412 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gabi3462g00010 412 FunFam UV excision repair protein RAD23 homolog 359 407 - -
Gabi3462g00010 412 SMART uba_6 180 220 IPR015940 -
Gabi3462g00010 412 SMART uba_6 368 405 IPR015940 -
Gabi3462g00010 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 181 221 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00010 Gabi-Chr3462 148065 155588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00010 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 43.243 1.05e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00010 K10839 - gmx:100809066 591.652