Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3462g00007 ATGTCGGAGCCTAAGAAACAACCGGCTAGTCAGAATCAGTCTAGAAGATTAAAACACAAGAACAATCGTGAATCCAAATGGACGAGGAAATTGCGCATCATTTATGACGATCCTGATGCTACTGACTCTTCATCAGATGAAGGCGAGAGCTTTGACAAGCTTGGGAAGATGAAGAGAACAGTGCGTGAGCTCACTTTCACTCTTCCCCTACCTTCAGTGAACCCTGTTACTGTCAATGCTGATGAGACTAGCACTGAGAACTCGTTCAACCACGGATTGAACAGGAAGAGTGTTTCAGCCAAAAACCCTTTAATGAATCGGGTTTCAGCCAAAAATCCTTCAATGGAGAGACAATCTTCTGGCAAATACAAAGGCGTTCGAATGAGGAAATGGGGCAAATGGGCTGCAGAGATTCGTGACCCTTTTAAGGGTGAACGTGTCTGGTTGGGCACTTTTAACACTGCAGAAGAGGCTTCCAATGCCTATGAGACCAAAAGGCTTGAAATTGAAGCTATGGCTAAGGCTCTATCTAATGAGAAGAACAAAAACAACAATGTTGTTGTTTCTGCTGAAGCTATGGCTACCCAAGAAAAGAGCAACTACTACTGTGCTTCTTCTGCTGCTGTTTCTGCAACAGACTCCAAGTCTGCTGCATTGGATGACTCAGAGTGTGTCTTGTCCCATGCATCACCTTCTTCTGTGCTCGAACTGGATATCTCAGCTTCCAATTTGATTGAGAGTGGTAAGGTTTCAAGCAGCGAAGCTGTTGAGACCAATGGTTTGGAGGCTGAATTTGCAGAAATGCCAGGTTTTAGTCTGTTGAATGTGCCATCCCCATCTGCTGTCGCTGCTTGTACCCCATCTCGGCTTGAGTTGGATTGTTTGGTGTTTGATGATTTTGGGCAGAGCTATGATGATGATCTTGGTGGCCTAGAGGACATTCAACTTTATGGTTTTGATGACAATGAGCCTAGTGCACTTCCCGATTATGATTTTGATGACTTTGGTGCTGATGAGTATGCTGGTTGGATTGAAGAACCCCTCAATATACCGTGCGTATAA 1062 0.4454 MSEPKKQPASQNQSRRLKHKNNRESKWTRKLRIIYDDPDATDSSSDEGESFDKLGKMKRTVRELTFTLPLPSVNPVTVNADETSTENSFNHGLNRKSVSAKNPLMNRVSAKNPSMERQSSGKYKGVRMRKWGKWAAEIRDPFKGERVWLGTFNTAEEASNAYETKRLEIEAMAKALSNEKNKNNNVVVSAEAMATQEKSNYYCASSAAVSATDSKSAALDDSECVLSHASPSSVLELDISASNLIESGKVSSSEAVETNGLEAEFAEMPGFSLLNVPSPSAVAACTPSRLELDCLVFDDFGQSYDDDLGGLEDIQLYGFDDNEPSALPDYDFDDFGADEYAGWIEEPLNIPCV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3462g00007 353 Gene3D AP2/ERF domain 121 178 IPR036955 GO:0003700|GO:0006355
Gabi3462g00007 353 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Gabi3462g00007 353 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3462g00007 353 SUPERFAMILY DNA-binding domain 122 169 IPR016177 GO:0003677
Gabi3462g00007 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 247 - -
Gabi3462g00007 353 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Gabi3462g00007 353 SMART rav1_2 122 186 IPR001471 GO:0003700|GO:0006355
Gabi3462g00007 353 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Gabi3462g00007 353 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Gabi3462g00007 353 CDD AP2 122 162 IPR001471 GO:0003700|GO:0006355
Gabi3462g00007 353 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3462g00007 Gabi-Chr3462 96084 98178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3462g00007 23 352 AP2-EREBP Transcription Factor Family AT1G68550 34.694 4.45e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi3462g00007 AP2 7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3462g00007 - - gmx:102667919 391.349